CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35559	Soybean	nucleus	97.58	97.67
KRH27613	Soybean	nucleus	84.34	85.14
Solyc01g079690.2.1	Tomato	nucleus	70.36	75.88
VIT_05s0020g02960.t01	Wine grape	nucleus	77.73	75.61
CDY18840	Canola	nucleus	72.13	71.47
AT3G06010.1	Thale cress	nucleus	72.88	70.96
Bra040237.1-P	Field mustard	nucleus	72.32	70.55
AT5G19310.1	Thale cress	nucleus	67.75	68.33
TraesCS1A01G087900.1	Wheat	nucleus	56.29	66.81
Zm00001d024816_P007	Maize	cytosol	64.21	62.07
Os05t0144300-01	Rice	nucleus	64.96	61.79
Zm00001d006798_P002	Maize	nucleus	64.21	61.74
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.49	61.4
TraesCS1B01G106900.4	Wheat	nucleus	63.75	60.26
TraesCS1D01G089200.2	Wheat	nucleus	63.56	59.98
GSMUA_Achr6P20210_001	Banana	nucleus	71.3	52.18
GSMUA_Achr8P06840_001	Banana	nucleus	64.49	50.14
KRH76800	Soybean	cytosol	22.46	31.63
KRH28662	Soybean	cytosol	22.27	31.32
KRH50913	Soybean	nucleus	27.96	28.36
KRH02212	Soybean	nucleus	27.77	28.14
KRH21031	Soybean	nucleus	27.59	27.74
KRH11241	Soybean	nucleus	27.68	27.71
KRG89166	Soybean	nucleus	19.29	27.53
KRH49484	Soybean	nucleus	19.2	27.32
KRH05279	Soybean	nucleus	10.81	25.61
KRH75253	Soybean	cytosol, nucleus, plastid	19.66	24.03
KRH02187	Soybean	nucleus	26.0	20.17
KRH73568	Soybean	nucleus	17.8	19.61
KRH52357	Soybean	nucleus	24.79	18.47
KRH61691	Soybean	nucleus	24.42	18.17
KRH14560	Soybean	nucleus	27.96	17.01
KRH33202	Soybean	nucleus	22.46	16.52
KRH66858	Soybean	nucleus	23.49	16.45
KRG95191	Soybean	nucleus	23.39	16.39
KRH40427	Soybean	nucleus	33.27	16.07
KRH48113	Soybean	nucleus	33.27	16.04
KRH00799	Soybean	nucleus	32.99	15.93
KRH06623	Soybean	nucleus	32.25	15.71
KRH71872	Soybean	nucleus	27.03	14.21
KRH38118	Soybean	nucleus	26.93	14.1
KRH42374	Soybean	nucleus	25.72	12.75
KRH58495	Soybean	nucleus	26.28	12.08
KRH50934	Soybean	nucleus	33.83	9.58

Protein Annotations

EntrezGene:100796912	MapMan:12.4.1.1.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:ACUP02012673	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G143200	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0042393	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1NGB6	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EnsemblPlants:KRG91253	ProteinID:KRG91253	ProteinID:KRG91253.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF14619	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF873
SMART:SM00487	SMART:SM00490	SMART:SM01314	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
InterPro:SnAC	UniParc:UPI000233E1CC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:38174541..38186544

Molecular Weight (calculated)

123877.0 Da

IEP (calculated)

7.471

GRAVY (calculated)

-0.704

Length

1073 amino acids

Sequence
(BLAST)

0001: MEKENELHAK TLICALNLLS RDLPLPPHIL NSVSSIYRNK HGDGGISRED LMTDLEDALS KQRPNCVSGF KLEQARDNRY RSQVQHRLNE LQELPSSRGE
0101: DLQTKCLLEL YGLKLAELQM KVRSDVSSEY WLNAKCAYPD RQLFDWGMMR LRRPLYGVGD PFAVDADDQL RKKREAERLS RLEEKEKNHI ETRTRKFFAE
0201: ILNTVREFQL QIQASVKRRK QRNDGVQAWH GRQRQRATRA EKLRFQALKA DDQEAYMRMV KESKNERLTL LLEETNKLLV NLGAAVQRQK DNKYSNGIEP
0301: LEDSEADLLE SDASKNGVSK ESPLDEDIDL IDSDHNGDSS DLLEGQRQYN SAIHSIQEKV TEQPSMLQGG ELRPYQIEGL QWMLSLFNNN LNGILADEMG
0401: LGKTIQTISL IAHLMEHKGV TGPHLIVAPK AVLPNWVNEF TTWAPSITAI LYDGRLDERK AMKEELSGEG KFNVLLTHYD LIMRDKAFLK KIQWQYLIVD
0501: EGHRLKNHES ALARTLDNGY HIQRRLLLTG TPIQNSLQEL WSLLNFLLPN IFNSVQNFED WFNAPFADRV DVSLTDEEQL LIIRRLHQVI RPFILRRKKD
0601: EVEKFLPVKS QVILKCDMSA WQKVYYQQVT DVGRVGLDNG SGKSKSLQNL TMQLRKCCNH PYLFVGDYDM YRRKEEIVRA SGKFELLDRL LPKLRRAGHR
0701: VLLFSQMTRL MDTLEVYLRL HDFKYLRLDG STKTEERGNL LRKFNAPDSP YFMFLLSTRA GGLGLNLQTA DTVIIFDSDW NPQMDQQAED RAHRIGQKKE
0801: VRVFVLVSVG SIEEVILERA KQKMGIDAKV IQAGLFNTTS TAQDRREMLE EIMRRGTSSL GTDVPSEREI NRLAARSDEE FWLFEKMDEE RRQKENYRSR
0901: LMEEHELPDW VYSPMNKDDK AKDFNSGVTG KRKRKEVVYA DTLSDLQWMK AVENGEDISK FSGKGKRRDH HSSDSIAQAS DNTGAEESLE LKTESVPMEN
1001: ERTSEDSFHV TPPAKRFNPE GTFLKQTYED VGSGLNHHLL SWNTHKKKRS SFLGQGSLSE TRGHSSNGRA NWN

Best Arabidopsis Sequence Match ( AT3G06010.1 )
(BLAST)

0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK

Arabidopsis Description

CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.