CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58495	Soybean	nucleus	95.43	88.44
VIT_01s0011g01480.t01	Wine grape	nucleus	62.48	62.68
CDY67658	Canola	cytosol, nucleus	31.56	60.5
CDY68094	Canola	nucleus	31.89	55.33
AT5G44800.1	Thale cress	nucleus	54.11	52.68
Bra027574.1-P	Field mustard	nucleus	52.87	51.49
Solyc02g068560.2.1	Tomato	nucleus	55.55	50.44
GSMUA_Achr9P11210_001	Banana	nucleus	43.48	45.72
Zm00001d006428_P002	Maize	nucleus	45.75	45.21
Zm00001d021541_P002	Maize	nucleus	46.35	45.08
KXG36264	Sorghum	nucleus	46.03	44.78
TraesCS2B01G251900.1	Wheat	nucleus	45.75	44.18
Os07t0497100-01	Rice	nucleus	45.84	43.91
TraesCS2D01G234200.1	Wheat	nucleus	45.47	43.79
TraesCS2A01G227900.1	Wheat	nucleus	45.24	43.61
GSMUA_Achr6P29570_001	Banana	nucleus	43.16	43.6
KRH05279	Soybean	nucleus	7.21	34.44
KRH28662	Soybean	cytosol	11.32	32.11
KRH76800	Soybean	cytosol	11.28	32.02
KRH21031	Soybean	nucleus	13.59	27.55
KRH11241	Soybean	nucleus	13.49	27.24
KRH50913	Soybean	nucleus	13.26	27.13
KRH02212	Soybean	nucleus	13.26	27.1
KRH61691	Soybean	nucleus	17.74	26.63
KRH52357	Soybean	nucleus	17.7	26.6
KRH49484	Soybean	nucleus	9.2	26.39
KRG89166	Soybean	nucleus	9.15	26.33
KRG91253	Soybean	nucleus	12.75	25.72
KRH35559	Soybean	nucleus	12.71	25.65
KRH27613	Soybean	nucleus	12.48	25.4
KRH75253	Soybean	cytosol, nucleus, plastid	10.12	24.94
KRH73568	Soybean	nucleus	9.52	21.15
KRH14560	Soybean	nucleus	16.31	20.01
KRH33202	Soybean	nucleus	11.88	17.61
KRH66858	Soybean	nucleus	12.15	17.17
KRG95191	Soybean	nucleus	12.11	17.11
KRH02187	Soybean	nucleus	10.72	16.78
KRH71872	Soybean	nucleus	14.46	15.34
KRH38118	Soybean	nucleus	14.23	15.03
KRH48113	Soybean	nucleus	14.51	14.11
KRH40427	Soybean	nucleus	14.42	14.04
KRH06623	Soybean	nucleus	14.28	14.03
KRH00799	Soybean	nucleus	14.37	14.0
KRH50934	Soybean	nucleus	16.5	9.42

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.20.920.10	EntrezGene:100815815	MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.40.50.10810
Gene3D:3.40.50.300	UniProt:A0A0R0IJ30	EMBL:ACUP02004800	InterPro:Bromodomain-like_sf	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom
InterPro:Chromo_domain	InterPro:DUF1087	EnsemblPlantsGene:GLYMA_08G086100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf
InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR019787	InterPro:IPR036427	InterPro:IPR038718
ProteinID:KRH42372.1	ProteinID:KRH42373.1	EnsemblPlants:KRH42374	ProteinID:KRH42374	ProteinID:KRH42374.1	ProteinID:KRH42375.1
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF00385	PFAM:PF00628	PFAM:PF06465
ScanProsite:PS01359	PFscan:PS50013	PFscan:PS50016	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF939	SMART:SM00249	SMART:SM00298	SMART:SM00487	SMART:SM00490	SMART:SM01147
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF46689	SUPFAM:SSF52540	SUPFAM:SSF54160	SUPFAM:SSF57903
UniParc:UPI0006EE0A22	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:6494204..6515059

Molecular Weight (calculated)

241257.0 Da

IEP (calculated)

7.980

GRAVY (calculated)

-0.700

Length

2164 amino acids

Sequence
(BLAST)

0001: MKENKSSAPK MLNRNWVLKR KRRKLPLGLD QSSGKEQSNG KEENSLTSES SRNASAKRVL KTEVATGQIS SKKKGNDGYY YECVICDVGG NLLCCDSCPR
0101: TYHLQCLDPP LKRIPNGKWQ CPSCFEGKDQ LMPKNHLDPI SKRARTKIVT TKSKDQVSSL NLEKVFGTKL VSKKRSSSKG KPISSMGVQF FGKKLLSSPA
0201: DETCSDKPID PSPESLMEGT SPGVDADEKK LSLSPNEYPV DRKSTSPAKE DEPLSKIASL EAIDEQLESK TDLTCSKISS RKTLVLAIAA SGEEVRKRKN
0301: KVVNDNTSQK KRKAEKGKKI VNPSSIKSKS GNNKVHKKQK SITHSISASV SKEDVGNKNS SAQQKDEKIS QLMKDTPSEV DKAWSRMDKT LLHEDSAIAE
0401: SLQVDRVLGC RIQGENANSS RNLSLNVAGD SPSGDLVISE NQSRLLDDNS ACANDLDVES TENHIEDCQN VKSSDEEGIL KNTDRLERIH VYRRSITKES
0501: KKGNPVDSLS KATDDLGPCD GDGKDQDDSA VSAEQLEKPT DKVETEEIIN VALRSEDNSE IPKNCEIQLS PEAKQKERNA EKGMSGSIDD KAQDAIIAEC
0601: AGPNGEQVFY EFLVKWVGKS HIHNSWISES QLKVLAKRKL ENYKAKYGMT IINICEERWK QPQRVLALRT SKHGTSEAFI KWTGLPYDEC TWESLDEPVL
0701: QISSHLITLF NKLETLTLER DSSKENSTRK SNDHQNDIFN LTEQPEDLKG GSLFPHQLEA LNWLRKCWYK SKNVILADEM GLGKTVSACA FISSLYFEFK
0801: VSLPCLVLVP LSTMPNWLAE FELWAPNVNV VEYHGCAKAR AIIRQYEWHA NDPSGLNKKT EAYKFNVLLT TYEMVLADSS HLRGVPWEVL VVDEGHRLKN
0901: SESKLFSLLN TFSFQHRVLL TGTPLQNNLG EMYNLLNFLQ PASFPSLSLF EEKFNDLTTA EKVDELKKLV APHMLRRLKK DAMQNIPPKT ERMVPVELSS
1001: IQAEYYRAML TKNYQVLRNI GKGVAQQSML NIVMQLRKVC NHPYLIPGTE PESGSVEFLH EMRIKASAKL TLLHSMLKIL HREGHRVLIF SQMTKLLDIL
1101: EDYLNIEFGS KTYERVDGSV SVADRQTAIA RFNQDKSRFV FLLSTRSCGL GINLATADTV IIYDSDFNPH ADIQAMNRAH RIGQSNRLLV YRLVVRASVE
1201: ERILQLAKKK LMLDQLFVNK SGSQKEVEDI LKWGTEELFN DSPGLNGKDM SENNNSSKDE AVADIEHKHR KRTGGLGDVY KDKCTDSSSK ILWDENAILK
1301: LLDRSNLQDG STDNAEGDSE NDMLGSVKAL EWNDEPTEEH VVGESPPHGT DDVSTQNSEK KEDNAVNGNE ENEWDKLLRV RWEKYQSEEE AALGRGKRQR
1401: KAVSYREVYA PHPSETMSES GGEEEKEPEP EPEREYTPAG RALKAKYGKL RARQKERLAR IKAIKESNPA EGFPGNELLS HSPAIAKGGD PVAGPMHSDQ
1501: EGPSINLEDR QLSEAKNSNT DSFSRINKLS KHKMTSHFDA SVSNLGRSLP DIFLPSHPKV GLSMTNSMPT NNLLPVLGLC APNANQIESS ESNISKLNWR
1601: HRHGSRQEFP FSLAPCSGTS MDAEVRSKEV AANTKLADAS TENLQPSFKN SIPDNSLTFV PFPPCVQGKE SDAFENSGAR FSHFQEKMAL PNLPFDERLL
1701: ARFPLTTKSM PNSHLDLLPS LSIGGRLESL NGSMQDLPTM PVLPNFKIPP EDLFRYNQQD RDAPPTLGLG QRPTTFSSFP ENHRKVLENI MMRTGSGSSN
1801: LLKKKSKSDG WSEDELDSLW IGVRRHGRGN WDAMLRDPKL KFSKYKTSED LSVRWEEEQV KVFQGPPFPA QRSSKTMKST KSAHFPISDG MMERALHGSK
1901: FLLPPKFQNH LTDMKLGIGD SASSLSHFST LDRPSLQNDH FVPLPSWSYD KNRSKFPEGA SAETSDRPGT SSVLTERPFL LNSFGTSTLG SLGLNCSGSI
2001: DAHQKEDDQG SSKRGKLPVL LDGSSNDVRH NPINVGNGES TSSGLLSNPT RPDLLHSKGE EVGGSSTLKD KLPHWLREAV SSPAKLPDPE LPPTVSAIAQ
2101: SVRLLYGEDK PTIPPFVIPG PPPSLPKDPR SSVKKKKKRR SHKISRSLPD FAGNQRGFAQ QPPC

Best Arabidopsis Sequence Match ( AT5G44800.1 )
(BLAST)

0001: MKDSGSEMIK RDWVMKQKRR KLPSILDILD QKVDSSMAFD SPEYTSSSKP SKQRLKTDST PERNSSKRKG NDGNYFECVI CDLGGDLLCC DSCPRTYHTA
0101: CLNPPLKRIP NGKWICPKCS PNSEALKPVN RLDAIAKRAR TKTKKRNSKA GPKCERASQI YCSSIISGEQ SSEKGKSISA EESKSTGKEV YSSPMDGCST
0201: AELGHASADD RPDSSSHGED DLGKPVIPTA DLPSDAGLTL LSCEDLSESK LSDTEKTHEA PVEKLEHASS EIVENKTVAE METGKGKRKK RKRELNDGES
0301: LERCKTDKKR AKKSLSKVGS SSQTTKSPES SKKKKKKNRV TLKSLSKPQS KTETPEKVKK LPKEERRAVR ATNKSSSCLE DTNSLPVGNL QVHRVLGCRI
0401: QGLTKTSLCS ALSDDLCSDN LQATDQRDSL VQDTNAELVV AEDRIDSSSE TGKSSRDSRL RDKDMDDSAL GTEGMVEVKE EMLSEDISNA TLSRHVDDED
0501: MKVSETHVSV ERELLEEAHQ ETGEKSTVAD EEIEEPVAAK TSDLIGETVS YEFLVKWVDK SNIHNTWISE AELKGLAKRK LENYKAKYGT AVINICEDKW
0601: KQPQRIVALR VSKEGNQEAY VKWTGLAYDE CTWESLEEPI LKHSSHLIDL FHQYEQKTLE RNSKGNPTRE RGEVVTLTEQ PQELRGGALF AHQLEALNWL
0701: RRCWHKSKNV ILADEMGLGK TVSASAFLSS LYFEFGVARP CLVLVPLSTM PNWLSEFSLW APLLNVVEYH GSAKGRAIIR DYEWHAKNST GTTKKPTSYK
0801: FNVLLTTYEM VLADSSHLRG VPWEVLVVDE GHRLKNSESK LFSLLNTFSF QHRVLLTGTP LQNNIGEMYN LLNFLQPSSF PSLSSFEERF HDLTSAEKVE
0901: ELKKLVAPHM LRRLKKDAMQ NIPPKTERMV PVELTSIQAE YYRAMLTKNY QILRNIGKGV AQQSMLNIVM QLRKVCNHPY LIPGTEPESG SLEFLHDMRI
1001: KASAKLTLLH SMLKVLHKEG HRVLIFSQMT KLLDILEDYL NIEFGPKTFE RVDGSVAVAD RQAAIARFNQ DKNRFVFLLS TRACGLGINL ATADTVIIYD
1101: SDFNPHADIQ AMNRAHRIGQ SKRLLVYRLV VRASVEERIL QLAKKKLMLD QLFVNKSGSQ KEFEDILRWG TEELFNDSAG ENKKDTAESN GNLDVIMDLE
1201: SKSRKKGGGL GDVYQDKCTE GNGKIVWDDI AIMKLLDRSN LQSASTDAAD TELDNDMLGS VKPVEWNEET AEEQVGAESP ALVTDDTGEP SSERKDDDVV
1301: NFTEENEWDR LLRMRWEKYQ SEEEAALGRG KRLRKAVSYR EAYAPHTSGP VNESGGEDEK EPEPELKKEY TPAGRALKEK FTKLRERQKN LIARRNSVEE
1401: SLPSGNVDQV TEVANQDEES PTSMDLDDSK ASQQCDAQKR KASSSDPKPD LLSQHHHGAE CLPSLPPNNL PVLGLCAPNF TQSESSRRNY SRPGSRQNRP
1501: ITGPHFPFNL PQTSNLVERE ANDQEPPMGK LKPQNIKEEP FQQPLSNMDG WLPHRQFPPS GDFERPRSSG AAFADFQEKF PLLNLPFDDK LLPRFPFQPR
1601: TMGTSHQDIM ANLSMRKRFE GTGHSMQDLF GGTPMPFLPN MKIPPMDPPV FNQQEKDLPP LGLDQFPSAL SSIPENHRKV LENIMLRTGS GIGHVQKKKT
1701: RVDAWSEDEL DSLWIGIRRH GYGNWETILR DPRLKFSKFK TPEYLAARWE EEQRKFLDSL SSLPSKSSRT DKSTKSSLFP GLPQGIMNRA LHGKYATPPR
1801: FQSHLTDIKL GFGDLASPLP LFEPSDHLGF RSEHFPPMAN LCTDNLPGEP SAGPSERAGT STNIPNEKPF PLNSLGMGNL GSLGLDSLSS LNTLRAEEKR
1901: DAIKRGKLPL FLDMPLPQML DSSNNVFLGR SANPSFLHPN RGLNPSNPMG RDIMGISSSE NKLPHWLRNV VTVPTVKSPE PPTLPPTVSA IAQSVRVLYG
2001: EDSTTIPPFV IPEPPPPAPR DPRHSLRKKR KRKLHSSSQK TTDIGSSSHN AVESSSQGNP QTSATPPLPP PSLAGETSGS SQPKLPPHNL NSTEPLSSEA
2101: IIIPPPEEDS VIAAAPSEAP GPSLEGITGT TKSISLESQS SEPETINQDG DLDPETDEKV ESERTPLHSD EKQEEQESEN ALNKQCEPIE AESQNTNAEE
2201: EAEAQEEDEE SMKMVTGNSL SDD

Arabidopsis Description

CHR4PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.