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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 22644768
gfp PMID: 22644768 doi
C Zhao, J Xu, Y Chen, C Mao, S Zhang, Y Bai, D Jiang, P Wu
State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, People's Republic of China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G251900.1 Wheat nucleus 75.83 76.44
TraesCS2D01G234200.1 Wheat nucleus 75.92 76.32
TraesCS2A01G227900.1 Wheat nucleus 75.56 76.04
KXG36264 Sorghum nucleus 71.93 73.07
Zm00001d021541_P002 Maize nucleus 70.47 71.55
Zm00001d006428_P002 Maize nucleus 68.88 71.05
CDY67658 Canola cytosol, nucleus 26.6 53.23
CDY68094 Canola nucleus 27.22 49.32
VIT_01s0011g01480.t01 Wine grape nucleus 44.0 46.08
KRH42374 Soybean nucleus 43.91 45.84
GSMUA_Achr9P11210_001 Banana nucleus 40.5 44.46
KRH58495 Soybean nucleus 45.11 43.64
GSMUA_Achr6P29570_001 Banana nucleus 41.3 43.56
Bra027574.1-P Field mustard nucleus 41.83 42.53
AT5G44800.1 Thale cress nucleus 41.61 42.29
Solyc02g068560.2.1 Tomato nucleus 43.2 40.96
Os03t0722400-01 Rice cytosol 10.27 27.33
Os09t0442700-01 Rice cytosol 10.09 26.98
Os07t0660200-01 Rice nucleus 7.22 25.83
Os01t0367900-01 Rice nucleus 12.09 24.66
Os05t0150300-01 Rice nucleus 12.0 23.4
Os04t0566100-00 Rice cytosol 8.81 23.06
Os05t0144300-01 Rice nucleus 11.42 22.87
Os01t0881000-00 Rice nucleus 10.67 21.89
Os03t0352500-01 Rice nucleus 1.73 18.22
Os02t0689800-01 Rice nucleus 6.86 14.54
Os06t0183800-01 Rice cytosol, nucleus 2.04 10.43
Os02t0114000-01 Rice cytosol, nucleus 2.26 8.75
Os03t0352450-00 Rice nucleus 1.28 6.32
Os02t0114033-00 Rice nucleus 1.33 3.47
Os06t0255200-02 Rice cytosol, nucleus, plastid 0.93 3.22
Protein Annotations
Gene3D:1.10.10.60MapMan:12.4.1.1.5Gene3D:2.40.50.40Gene3D:3.30.40.10Gene3D:3.40.50.10810Gene3D:3.40.50.300
InterPro:Chromo-like_dom_sfInterPro:Chromo/chromo_shadow_domInterPro:Chromo_domainInterPro:DUF1087GO:GO:0000166GO:GO:0000977
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003682GO:GO:0003712GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009506
GO:GO:0009987GO:GO:0042393GO:GO:0046872InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:Homeobox-like_sf
InterPro:IPR000953InterPro:IPR001650InterPro:IPR013083InterPro:IPR014001InterPro:IPR017877InterPro:IPR019787
InterPro:IPR038718InterPro:Myb-like_domEnsemblPlantsGene:Os07g0497100EnsemblPlants:Os07t0497100-01InterPro:P-loop_NTPasePFAM:PF00176
PFAM:PF00271PFAM:PF00385PFAM:PF00628PFAM:PF06465ScanProsite:PS01359PFscan:PS50013
PFscan:PS50016PFscan:PS50090PFscan:PS51192PFscan:PS51194PANTHER:PTHR10799PANTHER:PTHR10799:SF939
SMART:SM00249SMART:SM00298SMART:SM00487SMART:SM00490SMART:SM01147InterPro:SNF2-like_sf
InterPro:SNF2_NSUPFAM:SSF46689SUPFAM:SSF52540SUPFAM:SSF54160SUPFAM:SSF57903UniParc:UPI00001B39E4
InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
CHD-related gene 729, Chromatin Remodeling 4, crown rootless6Chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein, Chromatin-remodeling factor, Mi-2-like protein, Crown root development, Chloroplast development in adaxial mesophyll, Maintenance of H3K4me3 (Os07t0497100-01)
Coordinates
chr7:-:18625486..18639333
Molecular Weight (calculated)
251190.0 Da
IEP (calculated)
6.935
GRAVY (calculated)
-0.705
Length
2259 amino acids
Sequence
(BLAST)
0001: MMKERSSLCE SAADGSWVLK YKRKRSKLTV SPSSEHDASS PILDSQMNNG SIKKKIKHDT NISPSTKKIR GHDGYFYECV ECDLGGNLLC CDSCPRTYHL
0101: ECLNPPLKRA PPGNWQCPRC RTKKVSLKLL DNADADTSKR ERTRRMRTST TSDSPSPSPQ NKASFNTSRG AAFRDDEPGA KDNEVEKRKP LILHLKKRST
0201: KELSTDTTSS KSGLLGKSSE EKQEKHGSAL KVKKHLHPME LSPKKYKNKK QHNHRDSKRS EAKKVQYLAS DVDSDSSMEP STSLEHSESP PPKRKSLDGR
0301: TPASSTKKGK KKVKFVDKKH PENAVHITEK EHGGAGDKIT TQGDLQVDRI LGCRLQTSQI ISPAHASSEQ IDMAPPSASG APEPSQALLK GLHEEIQSSN
0401: SDTNVTEDAC ADELANDGGE NNLDCSDAQK ESNVRSHGHK ESLNAKEIMN TASACSADQI VTVKDAGAVQ TYVTASVNGE YETVTDIPEE KNDTKHPVSK
0501: ADTEVHTKQE HTPDSKLHGK IQETELKEHD GTTYEFLVKW VGKSNIHNSW ISESELKALA KRKLENYKAK YGTGLINICK EQWCQPQRVI ALRTSLDEIE
0601: EALIKWCALP YDECTWERLD EPTMVKYAHL VTQFKKFESQ ALDKDKGGSH AKPREHQEFN MLVEQPKELQ GGMLFPHQLE ALNWLRKCWY KSKNVILADE
0701: MGLGKTVSAC AFLSSLCCEY KINLPCLVLV PLSTMPNWMA EFASWAPHLN VVEYHGSARA RSIIRQYEWH EGDASQMGKI KKSHKFNVLL TTYEMVLVDA
0801: AYLRSVSWEV LIVDEGHRLK NSSSKLFSLL NTLSFQHRVL LTGTPLQNNI GEMYNLLNFL QPASFPSLAS FEEKFNDLTT TEKVEELKNL VAPHMLRRLK
0901: KDAMQNIPPK TERMVPVELT SIQAEYYRAM LTKNYQVLRN IGKGGAHQSL LNIVMQLRKV CNHPYLIPGT EPESGSPEFL HEMRIKASAK LTLLHSMLKI
1001: LHKDGHRVLI FSQMTKLLDI LEDYLTWEFG PKTFERVDGS VSVAERQAAI ARFNQDKSRF VFLLSTRSCG LGINLATADT VIIYDSDFNP HADIQAMNRA
1101: HRIGQSNRLL VYRLVVRASV EERILHLAKK KLMLDQLFVN KSESQKEVED IIRWGTEELF RNSDVAVKDN NEASGAKNDV AEVEFKHKRK TGGLGDVYED
1201: RCADGSAKFI WDENAITKLL DRSNVPSTVA ESTDGDLDND MLGTVKSIDW NDELNDDPGA TEDIPNIDND GCEQASEAKQ DAANRVEENE WDKLLRVRWE
1301: QYQTEEEASL GRGKRLRKAV SYRETFATIP NEALSEDSDE EDEPKREYTA AGLALKEKYE KLRARQKERI AQRHVIKNYA DDRLEEFMKL YDSSANPLRI
1401: VEDPNPVQPS GAKRLGESTA EMKQSSKKTK RYPEIPQELY AKLTGNAASS KHHPKAADIS NSGTPHHLLP VLGLCAPNAD QMNSYKGSVC GPSTKEQKRA
1501: SGELANKPLL TPAVDHSSEQ KHDGQPTPCK PMFPGSSEET LRRLNNIIPD SYFPFQPIPP ISGKGIGDHV ENPVSSIPSF QGKLGLPNFS LEDSIPLKHL
1601: KSVPDLFPNL SLGTSNEYLR NCVPELPNSS FLPSFMADIA GTSKQKNKFM ADMSGLLPGL AINPVQQIHS SMPENHKKVL DKLMMRAQYS SSKFLKNASN
1701: KFLKKSLKPD YWSEDELDAL WIGVRRHGRG NWEAMLRDPK LKFLSHRSHE ELASRWILEE QKIIEEPMPT ATRSSNSTSF PGISDAMMSR ALNGSSFSKL
1801: RMEPPKLQSH LTDIQLGCND IPTRFSHVEP TNYMNLSEGG PSLTPWQDFK NRSGHSGDFP GPLDKWEKPD MGLIPPFMPN PFMKESIGSL PINRHSSNSI
1901: QQNEVGSSSH ESILHGFSDG QAKLFHEMQR RVKLGKLPIE MNLNHTKLSD PLAENSGDFE SSKPNKLPHW LQEAVRAPPS KPPECELPAT VSAIAQSVCL
2001: LLGEQKPAIP PFPIPGPRLS LPKDPRSAPK KRRVHKVQQA SSLVDHSKTT VGQGDHNSTP SAPLSMEAAP ASPAVIKSSD TPSLNLNSPS SSSAGSRGQD
2101: ASTPSTFEEP ERTMEVSEPA SVAAATCPSR PEPPETGTHR IEFSAVDDMD TGSCRSPVRD TPDPDNQKSE LSGSGNTPTE LSVLPLVDAP GTSSEPAVVP
2201: VSSDEESTQE GVPGKAVSTG DQEKRTPPDE SENSGAANPV SAAQTADEDK VDEMITDEH
Best Arabidopsis Sequence Match ( AT5G44800.1 )
(BLAST)
0001: MKDSGSEMIK RDWVMKQKRR KLPSILDILD QKVDSSMAFD SPEYTSSSKP SKQRLKTDST PERNSSKRKG NDGNYFECVI CDLGGDLLCC DSCPRTYHTA
0101: CLNPPLKRIP NGKWICPKCS PNSEALKPVN RLDAIAKRAR TKTKKRNSKA GPKCERASQI YCSSIISGEQ SSEKGKSISA EESKSTGKEV YSSPMDGCST
0201: AELGHASADD RPDSSSHGED DLGKPVIPTA DLPSDAGLTL LSCEDLSESK LSDTEKTHEA PVEKLEHASS EIVENKTVAE METGKGKRKK RKRELNDGES
0301: LERCKTDKKR AKKSLSKVGS SSQTTKSPES SKKKKKKNRV TLKSLSKPQS KTETPEKVKK LPKEERRAVR ATNKSSSCLE DTNSLPVGNL QVHRVLGCRI
0401: QGLTKTSLCS ALSDDLCSDN LQATDQRDSL VQDTNAELVV AEDRIDSSSE TGKSSRDSRL RDKDMDDSAL GTEGMVEVKE EMLSEDISNA TLSRHVDDED
0501: MKVSETHVSV ERELLEEAHQ ETGEKSTVAD EEIEEPVAAK TSDLIGETVS YEFLVKWVDK SNIHNTWISE AELKGLAKRK LENYKAKYGT AVINICEDKW
0601: KQPQRIVALR VSKEGNQEAY VKWTGLAYDE CTWESLEEPI LKHSSHLIDL FHQYEQKTLE RNSKGNPTRE RGEVVTLTEQ PQELRGGALF AHQLEALNWL
0701: RRCWHKSKNV ILADEMGLGK TVSASAFLSS LYFEFGVARP CLVLVPLSTM PNWLSEFSLW APLLNVVEYH GSAKGRAIIR DYEWHAKNST GTTKKPTSYK
0801: FNVLLTTYEM VLADSSHLRG VPWEVLVVDE GHRLKNSESK LFSLLNTFSF QHRVLLTGTP LQNNIGEMYN LLNFLQPSSF PSLSSFEERF HDLTSAEKVE
0901: ELKKLVAPHM LRRLKKDAMQ NIPPKTERMV PVELTSIQAE YYRAMLTKNY QILRNIGKGV AQQSMLNIVM QLRKVCNHPY LIPGTEPESG SLEFLHDMRI
1001: KASAKLTLLH SMLKVLHKEG HRVLIFSQMT KLLDILEDYL NIEFGPKTFE RVDGSVAVAD RQAAIARFNQ DKNRFVFLLS TRACGLGINL ATADTVIIYD
1101: SDFNPHADIQ AMNRAHRIGQ SKRLLVYRLV VRASVEERIL QLAKKKLMLD QLFVNKSGSQ KEFEDILRWG TEELFNDSAG ENKKDTAESN GNLDVIMDLE
1201: SKSRKKGGGL GDVYQDKCTE GNGKIVWDDI AIMKLLDRSN LQSASTDAAD TELDNDMLGS VKPVEWNEET AEEQVGAESP ALVTDDTGEP SSERKDDDVV
1301: NFTEENEWDR LLRMRWEKYQ SEEEAALGRG KRLRKAVSYR EAYAPHTSGP VNESGGEDEK EPEPELKKEY TPAGRALKEK FTKLRERQKN LIARRNSVEE
1401: SLPSGNVDQV TEVANQDEES PTSMDLDDSK ASQQCDAQKR KASSSDPKPD LLSQHHHGAE CLPSLPPNNL PVLGLCAPNF TQSESSRRNY SRPGSRQNRP
1501: ITGPHFPFNL PQTSNLVERE ANDQEPPMGK LKPQNIKEEP FQQPLSNMDG WLPHRQFPPS GDFERPRSSG AAFADFQEKF PLLNLPFDDK LLPRFPFQPR
1601: TMGTSHQDIM ANLSMRKRFE GTGHSMQDLF GGTPMPFLPN MKIPPMDPPV FNQQEKDLPP LGLDQFPSAL SSIPENHRKV LENIMLRTGS GIGHVQKKKT
1701: RVDAWSEDEL DSLWIGIRRH GYGNWETILR DPRLKFSKFK TPEYLAARWE EEQRKFLDSL SSLPSKSSRT DKSTKSSLFP GLPQGIMNRA LHGKYATPPR
1801: FQSHLTDIKL GFGDLASPLP LFEPSDHLGF RSEHFPPMAN LCTDNLPGEP SAGPSERAGT STNIPNEKPF PLNSLGMGNL GSLGLDSLSS LNTLRAEEKR
1901: DAIKRGKLPL FLDMPLPQML DSSNNVFLGR SANPSFLHPN RGLNPSNPMG RDIMGISSSE NKLPHWLRNV VTVPTVKSPE PPTLPPTVSA IAQSVRVLYG
2001: EDSTTIPPFV IPEPPPPAPR DPRHSLRKKR KRKLHSSSQK TTDIGSSSHN AVESSSQGNP QTSATPPLPP PSLAGETSGS SQPKLPPHNL NSTEPLSSEA
2101: IIIPPPEEDS VIAAAPSEAP GPSLEGITGT TKSISLESQS SEPETINQDG DLDPETDEKV ESERTPLHSD EKQEEQESEN ALNKQCEPIE AESQNTNAEE
2201: EAEAQEEDEE SMKMVTGNSL SDD
Arabidopsis Description
CHR4PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.