Factsheet for Os03t0722400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0442700-01	Rice	cytosol	92.82	93.25
EER97913	Sorghum	cytosol	74.91	81.75
EER93549	Sorghum	cytosol	79.27	80.5
TraesCS7A01G074600.1	Wheat	cytosol	70.79	80.03
Zm00001d033827_P006	Maize	cytosol	79.62	79.72
TraesCS7D01G069700.1	Wheat	cytosol	72.67	79.2
TraesCS2A01G368200.1	Wheat	cytosol	72.08	78.56
Zm00001d007978_P003	Maize	cytosol	72.79	78.43
TraesCS2D01G365000.1	Wheat	cytosol	74.68	77.22
TraesCS2B01G385300.1	Wheat	cytosol	74.2	76.92
TraesCS4D01G053600.2	Wheat	cytosol	75.27	76.53
TraesCS4A01G261000.1	Wheat	cytosol	75.15	76.13
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	73.26	71.33
GSMUA_Achr3P26090_001	Banana	cytosol	63.25	70.75
TraesCS4B01G053600.1	Wheat	cytosol, plastid	75.15	70.42
VIT_04s0023g01610.t01	Wine grape	cytosol	61.84	69.17
PGSC0003DMT400040011	Potato	cytosol	61.25	68.97
PGSC0003DMT400038561	Potato	cytosol	60.78	67.89
Solyc02g062780.2.1	Tomato	cytosol	60.31	66.41
KRH76800	Soybean	cytosol	58.3	64.96
AT5G66750.1	Thale cress	cytosol	58.07	64.53
KRH28662	Soybean	cytosol	57.95	64.48
CDX81370	Canola	cytosol	57.83	64.1
CDY57125	Canola	cytosol	57.6	63.84
Bra012099.1-P	Field mustard	cytosol	57.83	63.68
CDY53848	Canola	cytosol	57.83	63.68
CDY30755	Canola	cytosol	57.83	63.44
Solyc02g085390.2.1	Tomato	cytosol	60.42	63.26
Bra037150.1-P	Field mustard	nucleus	57.6	40.78
Os01t0367900-01	Rice	nucleus	31.45	24.12
Os04t0566100-00	Rice	cytosol	24.5	24.1
Os05t0150300-01	Rice	nucleus	32.16	23.58
Os05t0144300-01	Rice	nucleus	30.62	23.05
Os01t0881000-00	Rice	nucleus	24.5	18.89
Os07t0660200-01	Rice	nucleus	11.54	15.53
Os03t0352500-01	Rice	nucleus	2.83	11.21
Os07t0497100-01	Rice	nucleus	27.33	10.27
Os02t0689800-01	Rice	nucleus	11.19	8.91
Os03t0352450-00	Rice	nucleus	2.59	4.79
Os02t0114033-00	Rice	nucleus	3.06	3.01
Os06t0255200-02	Rice	cytosol, nucleus, plastid	1.18	1.53
Os06t0183800-01	Rice	cytosol, nucleus	0.59	1.13
Os02t0114000-01	Rice	cytosol, nucleus	0.71	1.03

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:4333943	EMBL:AB177379	ProteinID:BAF34945.1
ncoils:Coil	ProteinID:EEE59829.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlantsGene:Os03g0722400
EnsemblPlants:Os03t0722400-01	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	UniProt:Q05KP5	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0000E5B023	RefSeq:XP_015628173.1	SEG:seg	:

Description

Decrease in DNA Methylation 1bChromatin remodeling factor, Genome-wide DNA methylation (Os03t0722400-01)

Coordinates

chr3:+:29305425..29311650

Molecular Weight (calculated)

95500.3 Da

IEP (calculated)

5.199

GRAVY (calculated)

-0.469

Length

849 amino acids

Sequence
(BLAST)

001: MVEGMVVAVA NGTKVEAAPA AGAGAAANAD SPTSVLEDEI SECKNGDASD TVEAIKQEDD HLKVLAEERA DDFVDASSSL TVELAANNGD LSPHPVPVKE
101: EDQLLEPVKE EKADDFVDAT SSLPIDLEAK NGDASLITDA MKEEEDKLHE ARVKADEEEE ARKRAEAARL AFDPNARFNK LDELLTQTQL YSEFLLEKME
201: TIADVEGVDT PDEEEPVEEK KKGRGRKRKA TSAPKYNNKK AKKAVAAMLT RSREDCSPED CTLTEEERWE KEQARLVPLM TGGKLKSYQI KGVKWLISLW
301: QNGLNGILAD QMGLGKTIQT IGFLAHLKGK GLDGPYLIIA PLSTLSNWVN EISRFVPSMT GVIYHGDKAA RAEIRRKFMP KTTGPNFPLI VTSYEMAMSD
401: AKQLAHYKWK YVIVDEGHRL KNSKCILLRE LKRLPMDNKL LLTGTPLQNN LAELWSLLNF ILPDIFSSHQ EFESWFDFCA KGGEEEQEES EEKRKVDVVS
501: KLHAILRPFL LRRMKEDVEH MLPRKKEIII YANMTNHQKE IQNHLVEQTF DEYLHEKSEI VLRRPGIKAK LNNLLIQLRK NCNHPDLLES AYDSSGMYPP
601: VEKLLEQCGK FQLLNRLLNL LLARKHKVLI FSQWTKVLDI IEYYLETKGL QVCRIDGSVK LEERRRQIAE FNDLNSSMNI FILSTRAGGL GINLTSADTC
701: ILYDSDWNPQ MDLQAMDRCH RIGQTRPVHV YRLATSHSVE GRIIKKAFGK LRLEHVVIGK GQFEQDRAKP NALDEAELLA LLRDEQDEED RMIQTDITDE
801: DLLKVMDRSD LTGPPANADA APLVPLKGPG WEVVVPTKSG GGMLTSLTS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.