Factsheet for Solyc02g085390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038561	Potato	cytosol	90.38	96.45
Solyc02g062780.2.1	Tomato	cytosol	76.45	80.42
VIT_04s0023g01610.t01	Wine grape	cytosol	72.38	77.34
KRH76800	Soybean	cytosol	67.08	71.39
KRH28662	Soybean	cytosol	66.83	71.04
AT5G66750.1	Thale cress	cytosol	66.34	70.42
CDY57125	Canola	cytosol	66.34	70.23
CDX81370	Canola	cytosol	66.21	70.1
Bra012099.1-P	Field mustard	cytosol	66.58	70.04
CDY53848	Canola	cytosol	66.46	69.91
CDY30755	Canola	cytosol	66.46	69.64
GSMUA_Achr3P26090_001	Banana	cytosol	63.13	67.46
EER97913	Sorghum	cytosol	62.15	64.78
TraesCS7A01G074600.1	Wheat	cytosol	59.56	64.31
TraesCS7D01G069700.1	Wheat	cytosol	61.53	64.06
Zm00001d007978_P003	Maize	cytosol	62.02	63.83
TraesCS2A01G368200.1	Wheat	cytosol	59.93	62.39
EER93549	Sorghum	cytosol	62.64	60.77
TraesCS4D01G053600.2	Wheat	cytosol	62.52	60.72
TraesCS4A01G261000.1	Wheat	cytosol	62.64	60.62
Os03t0722400-01	Rice	cytosol	63.26	60.42
TraesCS2D01G365000.1	Wheat	cytosol	61.16	60.41
Os09t0442700-01	Rice	cytosol	62.64	60.12
TraesCS2B01G385300.1	Wheat	cytosol	60.67	60.07
Zm00001d033827_P006	Maize	cytosol	62.52	59.79
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	62.39	58.03
TraesCS4B01G053600.1	Wheat	cytosol, plastid	62.76	56.18
Bra037150.1-P	Field mustard	nucleus	66.71	45.12
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	24.17	31.97
Solyc02g014770.2.1	Tomato	nucleus	24.04	26.42
Solyc08g029120.1.1	Tomato	nucleus	22.93	26.35
Solyc01g079690.2.1	Tomato	nucleus	31.07	25.33
Solyc06g054560.2.1	Tomato	nucleus	33.05	25.26
Solyc01g067390.2.1	Tomato	nucleus	32.92	25.07
Solyc06g065730.2.1	Tomato	nucleus	28.36	16.01
Solyc04g016370.2.1	Tomato	nucleus	29.59	15.59
Solyc12g099910.1.1	Tomato	nucleus	31.94	15.17
Solyc03g063220.1.1	Tomato	nucleus	29.96	15.11
Solyc01g094800.2.1	Tomato	nucleus	28.11	10.2
Solyc02g068560.2.1	Tomato	nucleus	28.36	9.65
Solyc11g062010.1.1	Tomato	nucleus	30.83	9.37

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
UniProt:K4BB51	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g085390.2	EnsemblPlants:Solyc02g085390.2.1	UniParc:UPI000276921F	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:48310581..48318523

Molecular Weight (calculated)

92767.7 Da

IEP (calculated)

6.669

GRAVY (calculated)

-0.434

Length

811 amino acids

Sequence
(BLAST)

001: MWSTITRADA IDGFHDIISN FLGAAHSLRS HPGSVAPTFF RSLKKLIQFG LKMVADEGVK DRAVADSPVS VLEDEDTCKE DLTVKLEEEV SLYSENGDAT
101: HIPENMAKEE EILIKTRAKE EEEQLNNLKE VPILNDTQFT KLDELLTQTQ LYSEFLLEKM DNITTTKVME DEEKSVKENK KGRGSKRKAT SYNNNKAKRA
201: VAAMLTRSKE DVPIEDATLT EEERFEKEQA ELVPLLTGGK LKSYQLKGVK WLISLWQNGL NGILADQMGL GKTIQTIAFL AHLKGNGLNG PYLVIAPLST
301: LSNWLNEMER FVPSIKAIIY HGDKKQRDEI RMKHMPRTIG PNFPIVITSY EIAMSDSRKF LRHYSWKYLV VDEGHRLKNS KCKLLKELKL LPIENKLLLT
401: GTPLQNNLAE LWSLLNFILP DIFSSHDEFE SWFDLSGKFS TESEKEEMEE RRRAQVVAKL HAILRPFLLR RLKVDVEQML PRKKEIILYA TLTDYQKKFQ
501: EHLINRTLEG YLIENVSTGN GFKGRLNNLM VQLRKNCNHP DLLESIFNSS NFYPPVEQIV EQCGKFRLLD RLLSKLFARK HKVLIFSQWT RVLDLMDYYF
601: SERGFDVCRI DGSVKLDERK RQIKEFNDVS SKYRIFLLST RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST ALSVEGRILK
701: RAFSKLKLEH VVIGKGQFKQ ESSKPSMDVT EEEDLLSLLR DQDSEEDKLV QTDISDEDLQ RILDRSDLLI RPPSGEDGNT ESCVNVLPLK GPGWEVVIPT
801: ATGGMLSTLN S

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.