CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033827_P006	Maize	cytosol	93.06	91.75
EER97913	Sorghum	cytosol	76.32	82.01
TraesCS2A01G368200.1	Wheat	cytosol	74.16	79.59
Os03t0722400-01	Rice	cytosol	80.5	79.27
TraesCS7A01G074600.1	Wheat	cytosol	71.17	79.23
TraesCS7D01G069700.1	Wheat	cytosol	73.44	78.82
Os09t0442700-01	Rice	cytosol	79.19	78.34
TraesCS2D01G365000.1	Wheat	cytosol	76.67	78.08
TraesCS2B01G385300.1	Wheat	cytosol	76.32	77.9
TraesCS4D01G053600.2	Wheat	cytosol	75.0	75.09
TraesCS4A01G261000.1	Wheat	cytosol	75.0	74.82
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	73.44	70.41
TraesCS4B01G053600.1	Wheat	cytosol, plastid	75.0	69.21
PGSC0003DMT400040011	Potato	cytosol	61.96	68.7
GSMUA_Achr3P26090_001	Banana	cytosol	62.2	68.51
VIT_04s0023g01610.t01	Wine grape	cytosol	62.08	68.38
PGSC0003DMT400038561	Potato	cytosol	60.89	66.97
Solyc02g062780.2.1	Tomato	cytosol	61.24	66.41
KRH76800	Soybean	cytosol	58.85	64.57
KRH28662	Soybean	cytosol	58.49	64.09
AT5G66750.1	Thale cress	cytosol	58.37	63.87
CDX81370	Canola	cytosol	58.13	63.45
CDY57125	Canola	cytosol	58.01	63.32
Bra012099.1-P	Field mustard	cytosol	58.13	63.03
CDY53848	Canola	cytosol	58.13	63.03
CDY30755	Canola	cytosol	58.13	62.79
Solyc02g085390.2.1	Tomato	cytosol	60.77	62.64
Bra037150.1-P	Field mustard	nucleus	58.01	40.45
KXG32501	Sorghum	nucleus	32.3	24.39
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.62	22.72
KXG26914	Sorghum	nucleus	24.52	21.11
OQU93492	Sorghum	cytosol	22.85	21.06
KXG33813	Sorghum	nucleus	26.55	19.27
KXG19483	Sorghum	cytosol	26.67	16.84
OQU92590	Sorghum	nucleus	25.6	15.23
KXG36860	Sorghum	nucleus	29.07	14.07
OQU85588	Sorghum	nucleus	27.75	11.45
OQU84199	Sorghum	nucleus	28.71	11.32
KXG36264	Sorghum	nucleus	27.63	10.39
OQU76185	Sorghum	nucleus	29.9	6.18

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:8059982	UniProt:C5WMX0	ncoils:Coil
EnsemblPlants:EER93549	ProteinID:EER93549	ProteinID:EER93549.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	EnsemblPlantsGene:SORBI_3001G109700
SUPFAM:SSF52540	unigene:Sbi.11970	UniParc:UPI0001A827E0	RefSeq:XP_002466551.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:8510687..8517417

Molecular Weight (calculated)

93766.8 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.404

Length

836 amino acids

Sequence
(BLAST)

001: MVGGMVVAVP NGVKADGALA AAVAAKADSP KSVLEDEKIS ESKTGNASFA TESFKQEQEH SDDLVDASSS LPVDHEIDSA GVPPVVKAVK DEEQLLEPVK
101: QDKVDDEDAS LSIPIDLEAK NGDVSLITEA MKKEEEQLEE ARIKAEEEEE ARKREEAAKL AFDPKARYSK LDELLTKTQL YSEFLLEKMD KIADEVEPQG
201: EESPVEEKKK GRGRKRKAKA APQYNDKKAK TAVAAMLTRS REDRLADDST LSEEEKCTKE QANLVPLMTG GKLKSYQIKG VKWLISLWQN GLNGILADQM
301: GLGKTIQTIG FLAHLKGKGM HGPYMIIAPL STLSNWVNEI SRFVPSVTSI IYHGDKVARA EIRRKFMPKT AGPDFPIIVT SFEVAMLDAR FLAHYQWKYV
401: VVDEGHRLKN SKCKLFREMK RIPMANKLLL TGTPLQNNLA ELWSLLNFIL PDIFSSHQEF ESWFDFSAKG SEEPEETEEK RRVHVVSKLH AILRPFLLRR
501: MKEDVEQMLP RKKEIIIYAN MTEVQKRIQD HLVEKSFDVY LNEESDIVLR KPGIKAKLNS LCIQLRKNCA HPDLLEAAFG TTSLYPPVNK LLEQCGKFQL
601: LDRLLTSLLA RKHKVLIFSQ WTKVLDILEY YLDSKGLGVC RIDGSVNLEE RRRQIAEFND VNSSLNVFIL STRAGGLGIN LTSADTCILY DSDWNPQMDL
701: QAMDRCHRIG QTRPVHVYRL ATSHSVEERI IKRAFGKLKL EHVVIGKGQF EQERAKPNVL AEGELLALLR DEQDEEDRMI QTDISDEDLL KLMDRSDLSG
801: PPGAADATPL IPLKGPGWEV VVPAKSGGGM LSSLTS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.