Factsheet for Solyc02g062780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040011	Potato	cytosol	94.03	96.15
VIT_04s0023g01610.t01	Wine grape	cytosol	76.13	77.34
Solyc02g085390.2.1	Tomato	cytosol	80.42	76.45
KRH76800	Soybean	cytosol	71.34	72.18
KRH28662	Soybean	cytosol	70.95	71.69
CDX81370	Canola	cytosol	69.91	70.37
CDY57125	Canola	cytosol	69.91	70.37
AT5G66750.1	Thale cress	cytosol	69.52	70.16
Bra012099.1-P	Field mustard	cytosol	69.65	69.65
CDY53848	Canola	cytosol	69.52	69.52
CDY30755	Canola	cytosol	69.65	69.38
GSMUA_Achr3P26090_001	Banana	cytosol	66.67	67.72
TraesCS7A01G074600.1	Wheat	cytosol	62.13	63.78
Zm00001d007978_P003	Maize	cytosol	65.11	63.71
EER97913	Sorghum	cytosol	63.94	63.37
TraesCS7D01G069700.1	Wheat	cytosol	63.94	63.29
TraesCS2A01G368200.1	Wheat	cytosol	62.78	62.13
EER93549	Sorghum	cytosol	66.41	61.24
TraesCS4D01G053600.2	Wheat	cytosol	66.02	60.96
TraesCS4A01G261000.1	Wheat	cytosol	66.15	60.86
Os03t0722400-01	Rice	cytosol	66.41	60.31
TraesCS2D01G365000.1	Wheat	cytosol	64.07	60.17
TraesCS2B01G385300.1	Wheat	cytosol	63.81	60.07
Zm00001d033827_P006	Maize	cytosol	66.02	60.02
Os09t0442700-01	Rice	cytosol	65.76	60.0
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	64.07	56.65
TraesCS4B01G053600.1	Wheat	cytosol, plastid	65.76	55.96
Bra037150.1-P	Field mustard	nucleus	69.91	44.95
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	24.64	31.0
Solyc08g029120.1.1	Tomato	nucleus	24.51	26.77
Solyc02g014770.2.1	Tomato	nucleus	25.03	26.15
Solyc06g054560.2.1	Tomato	nucleus	35.8	26.01
Solyc01g067390.2.1	Tomato	nucleus	35.67	25.82
Solyc01g079690.2.1	Tomato	nucleus	31.39	24.32
Solyc06g065730.2.1	Tomato	nucleus	29.96	16.08
Solyc04g016370.2.1	Tomato	nucleus	30.74	15.4
Solyc12g099910.1.1	Tomato	nucleus	32.94	14.88
Solyc03g063220.1.1	Tomato	nucleus	29.83	14.3
Solyc01g094800.2.1	Tomato	nucleus	29.31	10.11
Solyc02g068560.2.1	Tomato	nucleus	30.61	9.9
Solyc11g062010.1.1	Tomato	nucleus	31.65	9.15

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	UniProt:K4B6G6	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g062780.2	EnsemblPlants:Solyc02g062780.2.1	UniParc:UPI0002768458	SEG:seg

Description

No Description!

Coordinates

chr2:-:34555589..34566045

Molecular Weight (calculated)

87766.6 Da

IEP (calculated)

6.613

GRAVY (calculated)

-0.455

Length

771 amino acids

Sequence
(BLAST)

001: MVANADTGVN GHTDIVANVD TGVNEVKDVV TKADSPVSVL AEEDTCKEKL TVKLEDEVFL DAKNGDVSLL SESMKKEEEN LIKARVKEEE VNNPKEAPNL
101: NDLQFSKLDE LLTQTQLYSE FLLEKIINIT MTGVKDEEEG SEDKKRGHGR KRKGETSYNN KKAKRAVAAM LSRSKEGGSV EDSTLTEEER ADKEQAELVP
201: LLTGGKLKSY QLKGVKWLIS LWQNGLNGIL ADQMGLGKTI QTISFLAHLK GNGLHGPYLV IAPLSTLSNW MNEIERFVPS INAIIYHGNK KQRDEIRRKH
301: MPRTIGPKFP IVLTSYEIAM VDAKKFLRHY TWKYLVVDEG HRLKNSKCKL FKELKLLPIE NKLLLTGTPL QNNLAELWSL LNFILPDIFS SLEEFESWFD
401: LSGRCGNEAQ KEEVEEKRRT QVVAKLHAIL RPFLLRRLKV DVEQMLPRKK EIILYATMTE HQKKFQDHLI NRTLEGYLTE NVSLGNHFRG KLTNLMIQLR
501: KNCNHPDLLE SAFDGSYHYP PIEQIVGQCG KFCLLERLLS ELFARKHKVL IFSQWTRVLD IMDYYFSERG FDVCKIDGRV KLDERRRQIK EFNDVNSECR
601: VFLLSTRAGG LGINLTAADT CILYDSDWNP QMDLQAMDRC HRIGQTKPVH VYRLATALSV EGRMLKRAFS KLKLEHVVIG KGQFKQERST TDTMEEEDLL
701: TLLRDDDTEE DRLTQTDISD EDLQRILDRS DLVVGSASED ESKVNVVPLK GPGWDVVVPT ASGGMLSTLN S

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.