Factsheet for Solyc01g067390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058376	Potato	nucleus	98.5	98.59
CDY47176	Canola	cytosol	39.62	89.03
Solyc06g054560.2.1	Tomato	nucleus	87.61	87.94
KRH21031	Soybean	nucleus	87.04	86.88
VIT_05s0020g01780.t01	Wine grape	nucleus	87.89	86.67
KRH11241	Soybean	nucleus	87.14	86.57
AT3G06400.3	Thale cress	nucleus	85.45	86.09
Bra040221.1-P	Field mustard	nucleus	84.23	85.51
CDY18857	Canola	nucleus	84.23	85.51
KRH50913	Soybean	nucleus	84.51	85.07
AT5G18620.2	Thale cress	nucleus	84.88	84.33
KRH02212	Soybean	nucleus	83.47	83.95
CDY24695	Canola	nucleus	82.91	83.86
Bra020751.1-P	Field mustard	nucleus	82.91	83.86
GSMUA_Achr8P09960_001	Banana	nucleus	84.88	83.63
CDY13907	Canola	nucleus	82.35	82.81
CDX92595	Canola	nucleus	69.39	82.66
Bra002173.1-P	Field mustard	nucleus	82.54	82.61
GSMUA_Achr3P23910_001	Banana	nucleus	81.22	80.92
KXG32501	Sorghum	nucleus	81.69	78.59
CDY02609	Canola	nucleus	77.65	78.39
Os01t0367900-01	Rice	nucleus	81.41	78.32
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	83.29	78.29
Bra023689.1-P	Field mustard	nucleus	80.38	77.75
TraesCS1B01G118900.2	Wheat	nucleus	80.47	77.49
TraesCS1D01G099600.1	Wheat	nucleus	80.47	77.42
Zm00001d040831_P021	Maize	nucleus	81.41	77.41
Zm00001d009312_P028	Maize	nucleus	81.88	77.17
TraesCS1A01G091100.1	Wheat	nucleus	79.91	76.94
Os05t0150300-01	Rice	nucleus	81.13	74.61
TraesCS3D01G068900.1	Wheat	nucleus	77.09	73.24
TraesCS3B01G083400.1	Wheat	nucleus	77.75	73.02
TraesCS3A01G069900.2	Wheat	nucleus	77.09	72.65
HORVU1Hr1G021540.17	Barley	plasma membrane	80.38	72.48
HORVU3Hr1G012850.1	Barley	nucleus	75.4	70.87
Solyc02g062780.2.1	Tomato	cytosol	25.82	35.67
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	19.81	34.42
Solyc02g085390.2.1	Tomato	cytosol	25.07	32.92
Solyc01g079690.2.1	Tomato	nucleus	27.7	29.65
Solyc08g029120.1.1	Tomato	nucleus	19.15	28.9
Solyc02g014770.2.1	Tomato	nucleus	18.4	26.56
Solyc12g099910.1.1	Tomato	nucleus	32.49	20.27
Solyc06g065730.2.1	Tomato	nucleus	25.82	19.14
Solyc03g063220.1.1	Tomato	nucleus	24.69	16.36
Solyc04g016370.2.1	Tomato	nucleus	23.29	16.11
Solyc01g094800.2.1	Tomato	nucleus	25.54	12.16
Solyc02g068560.2.1	Tomato	nucleus	26.57	11.88
Solyc11g062010.1.1	Tomato	nucleus	28.26	11.29

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818	GO:GO:0016887
GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom
InterPro:ISWI_HAND-dom_sf	UniProt:K4AWY8	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110
PFAM:PF09111	PFscan:PS51192	PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887
InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g067390.2
EnsemblPlants:Solyc01g067390.2.1	UniParc:UPI0002762F6C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:75866911..75877833

Molecular Weight (calculated)

123465.0 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.821

Length

1065 amino acids

Sequence
(BLAST)

0001: MARNTRAKSS SSEPLSDGSE EEQVNDLVND EEDEEELEAV ARSADDDGDD EAVADREDGD DDEDEEEDIA ANEISKREKA RLKDMQRRKK QKIQEMLDAQ
0101: NAAIEADMSN KGKGRLKYLL EQTELFAHFA KGDQSTSEKK TKGRGRHASK ITEEEEDEEY LKEEDGGLSG NTRLLAQPSC IQGKMRDYQL AGLNWMIRLY
0201: ENGINGILAD EMGLGKTLQT ISLLAYLHEF RGITGPHMVV APKSTLGNWM NEIKRFCPII RAVKFLGNPE ERRYIREDLL VAGKFDVCVT SFEMAIKEKS
0301: ALRRFNWRYI IIDEAHRIKN ENSLLSKTMR LYSTNYRLLI TGTPLQNNLH ELWALLNFLL PEIFSSAETF DEWFQISGEN DQQEVVQQLH KVLRPFLLRR
0401: LKSDVEKGLP PKKETILKVG MSQMQKNYYR ALLQKDFEVV NSGGERKRLL NIAMQLRKCC NHPYLFQGAE PGPPYTTGEH LIENAGKMVL LDKLLPKLKE
0501: RGSRVLIFSQ MTRLLDILED YLMYRGHQYC RIDGNTGGED RDASIEAYNR PGSEKFAFLL STRAGGLGIN LATADIVILY DSDWNPQVDL QAQDRAHRIG
0601: QKKEVQVFRF CTEYTIEEKV IERAYKKLAL DALVIQQGRL AEQKAVNKDE LLQMVRFGAE MVFSSKDSTI TDEDIDRIIA KGEEATAALD AKMKKFTEDA
0701: IKFKMDDTAD LYDFEDEKDE NKAHFKKIAG DNWIEPPRRE RKRNYSESEY FKQTMRPSGP ARPKEPRIPR MPQLHDFQFF NTQRLSELYE KEVRFLMQAH
0801: QKNQLKDSIE VEEPEDVGDP LTADEQEEKD KLLEEGFSTW SRRDFNTFIR ACEKYGRNDI ESIAAEMEGK TEEEVERYAN VFKERYKELN DYDRIIKNIE
0901: RGEARISRKD EIMKAIGKKL DRYKNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TAPLFRFDWF VKSRTTQELA RRCDTLIRLV
1001: ERENQEFDER ERQARKEKKL AKNATPSKRA VARQAAKSPP TSKKRKQSSM DDFVSSAKRR SDGTT

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.