Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040221.1-P | Field mustard | nucleus | 94.61 | 95.33 |
| CDY18857 | Canola | nucleus | 94.51 | 95.23 |
| CDY24695 | Canola | nucleus | 93.47 | 93.83 |
| Bra020751.1-P | Field mustard | nucleus | 93.19 | 93.54 |
| AT5G18620.2 | Thale cress | nucleus | 92.43 | 91.14 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 93.66 | 87.38 |
| KRH21031 | Soybean | nucleus | 88.08 | 87.25 |
| KRH11241 | Soybean | nucleus | 88.36 | 87.13 |
| KRH50913 | Soybean | nucleus | 86.47 | 86.39 |
| VIT_05s0020g01780.t01 | Wine grape | nucleus | 87.98 | 86.11 |
| KRH02212 | Soybean | nucleus | 85.9 | 85.74 |
| PGSC0003DMT400058376 | Potato | nucleus | 86.19 | 85.62 |
| Solyc01g067390.2.1 | Tomato | nucleus | 86.09 | 85.45 |
| PGSC0003DMT400079102 | Potato | nucleus | 84.77 | 84.69 |
| Solyc06g054560.2.1 | Tomato | nucleus | 84.58 | 84.26 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 84.96 | 83.07 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 81.84 | 80.92 |
| Os01t0367900-01 | Rice | nucleus | 82.88 | 79.13 |
| KXG32501 | Sorghum | nucleus | 82.69 | 78.95 |
| TraesCS1D01G099600.1 | Wheat | nucleus | 82.02 | 78.32 |
| TraesCS1B01G118900.2 | Wheat | nucleus | 81.84 | 78.21 |
| TraesCS1A01G091100.1 | Wheat | nucleus | 81.65 | 78.03 |
| Zm00001d040831_P021 | Maize | nucleus | 82.4 | 77.77 |
| Zm00001d009312_P028 | Maize | nucleus | 82.97 | 77.61 |
| Os05t0150300-01 | Rice | nucleus | 82.21 | 75.04 |
| TraesCS3D01G068900.1 | Wheat | nucleus | 78.24 | 73.77 |
| TraesCS3B01G083400.1 | Wheat | nucleus | 78.81 | 73.46 |
| HORVU1Hr1G021540.17 | Barley | plasma membrane | 81.93 | 73.33 |
| TraesCS3A01G069900.2 | Wheat | nucleus | 78.24 | 73.19 |
| HORVU3Hr1G012850.1 | Barley | nucleus | 77.29 | 72.11 |
| AT5G66750.1 | Thale cress | cytosol | 25.45 | 35.21 |
| AT5G19310.1 | Thale cress | nucleus | 28.1 | 27.91 |
| AT3G06010.1 | Thale cress | nucleus | 28.57 | 27.4 |
| AT2G44980.2 | Thale cress | cytosol | 22.14 | 26.68 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 19.02 | 26.34 |
| AT4G31900.1 | Thale cress | nucleus | 24.12 | 21.21 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 26.49 | 19.86 |
| AT2G13370.2 | Thale cress | nucleus | 31.88 | 19.55 |
| AT3G57300.2 | Thale cress | cytosol | 23.56 | 16.17 |
| AT3G12810.1 | Thale cress | nucleus | 26.77 | 13.77 |
| AT5G44800.1 | Thale cress | nucleus | 27.06 | 12.87 |
| AT2G46020.3 | Thale cress | plastid | 25.92 | 12.49 |
| AT2G28290.5 | Thale cress | nucleus | 28.57 | 8.45 |
Protein Annotations
| Gene3D:1.10.10.60 | Gene3D:1.10.1040.30 | MapMan:12.4.1.1.4 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:819814 |
| ProteinID:AEE74387.1 | ArrayExpress:AT3G06400 | EnsemblPlantsGene:AT3G06400 | RefSeq:AT3G06400 | TAIR:AT3G06400 | RefSeq:AT3G06400-TAIR-G |
| EnsemblPlants:AT3G06400.3 | TAIR:AT3G06400.3 | Unigene:At.28209 | Symbol:CHR11 | ncoils:Coil | UniProt:F4JAV9 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006325 |
| GO:GO:0006338 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009553 | GO:GO:0009653 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010228 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016569 |
| GO:GO:0016584 | GO:GO:0016589 | GO:GO:0016787 | GO:GO:0016818 | GO:GO:0016887 | GO:GO:0031491 |
| GO:GO:0040007 | GO:GO:0043044 | GO:GO:0051510 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:Homeobox-like_sf |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR017884 | InterPro:IPR036306 | InterPro:IPR038718 | InterPro:ISWI |
| InterPro:ISWI_HAND-dom | InterPro:ISWI_HAND-dom_sf | RefSeq:NP_001189826.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFAM:PF09110 | PFAM:PF09111 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51293 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF887 |
| InterPro:SANT/Myb | InterPro:SANT_dom | InterPro:SLIDE | SMART:SM00487 | SMART:SM00490 | SMART:SM00717 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF101224 | SUPFAM:SSF46689 | SUPFAM:SSF52540 | UniParc:UPI0001E92DF1 |
| SEG:seg | : | : | : | : | : |
Description
CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
Coordinates
chr3:+:1940973..1946885
Molecular Weight (calculated)
122620.0 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.824
Length
1057 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSKGADFYDF DDDNKDENKL DFKKIVSDNW NDPPKRERKR NYSESEYFKQ TLRQGAPAKP KEPRIPRMPQ LHDFQFFNIQ RLTELYEKEV
0801: RYLMQTHQKN QLKDTIDVEE PEGGDPLTTE EVEEKEGLLE EGFSTWSRRD FNTFLRACEK YGRNDIKSIA SEMEGKTEEE VERYAKVFKE RYKELNDYDR
0901: IIKNIERGEA RISRKDEIMK AIGKKLDRYR NPWLELKIQY GQNKGKLYNE ECDRFMICMI HKLGYGNWDE LKAAFRTSSV FRFDWFVKSR TSQELARRCD
1001: TLIRLIEKEN QEFDERERQA RKEKKLAKSA TPSKRPLGRQ ASESPSSTKK RKHLSMR
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSKGADFYDF DDDNKDENKL DFKKIVSDNW NDPPKRERKR NYSESEYFKQ TLRQGAPAKP KEPRIPRMPQ LHDFQFFNIQ RLTELYEKEV
0801: RYLMQTHQKN QLKDTIDVEE PEGGDPLTTE EVEEKEGLLE EGFSTWSRRD FNTFLRACEK YGRNDIKSIA SEMEGKTEEE VERYAKVFKE RYKELNDYDR
0901: IIKNIERGEA RISRKDEIMK AIGKKLDRYR NPWLELKIQY GQNKGKLYNE ECDRFMICMI HKLGYGNWDE LKAAFRTSSV FRFDWFVKSR TSQELARRCD
1001: TLIRLIEKEN QEFDERERQA RKEKKLAKSA TPSKRPLGRQ ASESPSSTKK RKHLSMR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.