Factsheet for AT4G31900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75208	Canola	cytosol	56.41	56.69
KRH05279	Soybean	nucleus	21.21	56.29
CDX68802	Canola	cytosol	56.66	56.1
Bra011311.1-P	Field mustard	nucleus	56.49	55.93
Solyc08g029120.1.1	Tomato	nucleus	32.36	55.1
AT2G25170.3	Thale cress	endoplasmic reticulum	63.14	53.83
VIT_04s0008g05880.t01	Wine grape	nucleus	58.15	47.49
KRH52357	Soybean	nucleus	55.99	46.74
KRH61691	Soybean	nucleus	55.99	46.67
Solyc06g065730.2.1	Tomato	nucleus	53.74	44.95
GSMUA_Achr4P21270_001	Banana	cytosol	51.08	44.52
KXG19483	Sorghum	cytosol	48.42	43.96
Zm00001d045109_P008	Maize	cytosol	47.67	42.95
TraesCS7B01G050100.3	Wheat	nucleus	48.09	42.66
TraesCS7A01G147100.2	Wheat	nucleus	47.84	42.31
TraesCS7D01G148900.4	Wheat	nucleus	47.67	40.78
AT5G66750.1	Thale cress	cytosol	17.47	27.49
AT2G44980.2	Thale cress	cytosol	18.64	25.54
AT2G02090.1	Thale cress	cytosol, plastid	15.56	24.51
AT3G06400.3	Thale cress	nucleus	21.21	24.12
AT5G18620.2	Thale cress	nucleus	21.38	23.97
AT5G19310.1	Thale cress	nucleus	20.13	22.74
AT3G06010.1	Thale cress	nucleus	20.13	21.96
AT2G13370.2	Thale cress	nucleus	26.12	18.21
AT5G44800.1	Thale cress	nucleus	26.96	14.57
AT3G57300.2	Thale cress	cytosol	18.05	14.09
AT3G12810.1	Thale cress	nucleus	21.55	12.6
AT2G46020.3	Thale cress	plastid	19.55	10.72
AT2G28290.5	Thale cress	nucleus	21.46	7.22

Protein Annotations

MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:829320	ProteinID:AEE85976.1
ArrayExpress:AT4G31900	EnsemblPlantsGene:AT4G31900	RefSeq:AT4G31900	TAIR:AT4G31900	RefSeq:AT4G31900-TAIR-G	EnsemblPlants:AT4G31900.1
TAIR:AT4G31900.1	Unigene:At.54572	ProteinID:CAB40760.1	ProteinID:CAB79908.1	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom
InterPro:Chromo_domain	ncoils:Coil	InterPro:DUF1086	InterPro:DUF1087	UniProt:F4JTF6	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
RefSeq:NP_194918.2	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF00385	PFAM:PF06461
PFAM:PF06465	Symbol:PKR2	PFscan:PS50013	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF853	SMART:SM00298	SMART:SM00487	SMART:SM00490	SMART:SM01146	SMART:SM01147
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF54160	UniParc:UPI000034F14B	SEG:seg

Description

CHR7CHD3-type chromatin-remodeling factor CHR7 [Source:UniProtKB/Swiss-Prot;Acc:F4JTF6]

Coordinates

chr4:+:15431528..15438443

Molecular Weight (calculated)

139424.0 Da

IEP (calculated)

5.188

GRAVY (calculated)

-0.648

Length

1202 amino acids

Sequence
(BLAST)

0001: MANLLQRLRR RTGPKPDYIE DKLDEYIREE QVEETGGSNQ DCPLGEIEKI LDREWRPTAS NNPNSSDNGT PTLVVVKQYL VKWKGLSYLH CSWVPEQEFE
0101: KAYKSHPHLK LKLRVTRFNA AMDVFIAENG AHEFIAIRPE WKTVDRIIAC REGDDGEEYL VKYKELSYRN SYWESESDIS DFQNEIQRFK DINSSSRRDK
0201: YVENERNREE FKQFDLTPEF LTGTLHTYQL EGLNFLRYSW SKKTNVILAD EMGLGKTIQS IAFLASLFEE NLSPHLVVAP LSTIRNWERE FATWAPHMNV
0301: VMYTGDSEAR DVIWEHEFYF SEGRKSKFDV LLTTYEMVHP GISVLSPIKW TCMIIDEGHR LKNQKSKLYS SLSQFTSKHI VLLTGTPLQN NLNELFALMH
0401: FLDADKFGSL EKFQDINKEE QISRLHQMLA PHLLRRLKKD VLKDKVPPKK ELILRVDMSS QQKEVYKAVI TNNYQVLTKK RDAKISNVLM KLRQVCSHPY
0501: LLPDFEPRFE DANEAFTKLL EASGKLQLLD KMMVKLKEQG HRVLIYTQFQ HTLYLLEDYF TFKNWNYERI DGKISGPERQ VRIDRFNAEN SNRFCFLLST
0601: RAGGIGINLA TADTVIIYDS DWNPHADLQA MARVHRLGQT NKVMIYRLIH KGTVEERMME ITKNKMLLEH LVVGKQHLCQ DELDDIIKYG SKELFSEEND
0701: EAGRSGKIHY DDAAIEQLLD RNHVDAVEVS LDDEEETDFL KNFKVASFEY VDDENEAAAL EEAQAIENNS SVRNADRTSH WKDLLKDKYE VQQAEELSAL
0801: GKRKRNGKQV MYAEDDLDGL EEISDEEDEY CLDDLKVTSD EEEEADEPEA ARQRKPRTVT RPYRKRARDN SEEIPLMEGE GRYLMVLGFN ETERDIFLRT
0901: FKRYGAGNFD WKEFVNPLYM KTYDEINKYG ILFLKHIAEN PTDNSTNFKV ITAMVYADGV PKEGISSDEL LVSMTFMMLV KEKCQFLDNH PTAPVFSNYV
1001: ISKYNLRNGA FSKEEHDRIL IPAVSKHGYG RWVAIVEDEE IGFQEVACKD LNIPFPPDTK SARKRICDHV GKRVKKMEDA IKYEYAEKIL AEQAKAETKG
1101: TSFVDAEKEM LKNDPITSKK NSATAVDNKQ GRVEMAQSYD QSVNEKSGES FQTYLDIQPL NRMPRESFKP LEPINEEIST RLSVGTDHDV EMDAADNIIV
1201: LD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.