Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75208 | Canola | cytosol | 98.19 | 99.67 |
| Solyc08g029120.1.1 | Tomato | nucleus | 35.83 | 61.61 |
| KRH05279 | Soybean | nucleus | 22.16 | 59.38 |
| Bra007814.1-P | Field mustard | nucleus | 65.24 | 58.02 |
| AT4G31900.1 | Thale cress | nucleus | 55.93 | 56.49 |
| KRH61691 | Soybean | nucleus | 58.65 | 49.38 |
| KRH52357 | Soybean | nucleus | 58.57 | 49.38 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 59.72 | 49.25 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 55.11 | 48.51 |
| Solyc06g065730.2.1 | Tomato | nucleus | 57.08 | 48.23 |
| KXG19483 | Sorghum | cytosol | 50.99 | 46.75 |
| Zm00001d045109_P008 | Maize | cytosol | 50.41 | 45.88 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 50.99 | 45.68 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 50.82 | 45.4 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 50.74 | 43.84 |
| Bra012099.1-P | Field mustard | cytosol | 17.55 | 27.63 |
| Bra040221.1-P | Field mustard | nucleus | 22.16 | 25.64 |
| Bra020751.1-P | Field mustard | nucleus | 21.91 | 25.26 |
| Bra017422.1-P | Field mustard | cytosol | 15.82 | 25.2 |
| Bra002173.1-P | Field mustard | nucleus | 21.99 | 25.09 |
| Bra023689.1-P | Field mustard | nucleus | 21.09 | 23.25 |
| Bra004881.1-P | Field mustard | nucleus | 12.11 | 22.72 |
| Bra040237.1-P | Field mustard | nucleus | 19.85 | 21.91 |
| Bra037208.1-P | Field mustard | nucleus | 25.45 | 18.33 |
| Bra037150.1-P | Field mustard | nucleus | 17.63 | 17.85 |
| Bra014632.1-P | Field mustard | cytosol | 18.7 | 14.99 |
| Bra027574.1-P | Field mustard | nucleus | 26.77 | 14.63 |
| Bra007318.1-P | Field mustard | nucleus | 17.38 | 14.1 |
| Bra034727.1-P | Field mustard | nucleus | 21.58 | 12.98 |
| Bra039296.1-P | Field mustard | plastid | 19.03 | 10.81 |
| Bra000409.1-P | Field mustard | plastid | 19.03 | 10.68 |
| Bra000114.1-P | Field mustard | nucleus | 20.84 | 7.73 |
Protein Annotations
| MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra011311 | EnsemblPlants:Bra011311.1 |
| EnsemblPlants:Bra011311.1-P | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF1086 |
| InterPro:DUF1087 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4D4A7 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFAM:PF00385 | PFAM:PF06461 | PFAM:PF06465 | PFscan:PS50013 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01146 | SMART:SM01147 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 |
| UniParc:UPI000254662A | SEG:seg | : | : | : | : |
Description
AT4G31900 (E=0.0) | chromatin remodeling factor, putative
Coordinates
chrA01:-:2788209..2800605
Molecular Weight (calculated)
140575.0 Da
IEP (calculated)
5.449
GRAVY (calculated)
-0.582
Length
1214 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSLAGSRLR KRPDRRPLYT VDDSDDDDDF VQNKDQATEI VEGTVGREAV TPLTEMEKIL DCQMRPTTSN DPDSSDSAAP KQVVVKQYLV KWKGLSYLHC
0101: SWVAEEEFQK AYKFIRRLRS RVIKFHSTME SMSNSGDDFV AIHPEWTTVD RIIDCRGEGE DKEYLVKFKE LSYDECYWES ESDISTFQNE IQRFKDINSG
0201: HRRDKYVDHE RNHEDFKQFD HTPEFITGSL HPYQLEGLNF LRFTWSNRTH VILADEMGLG KTIQSIAFLA SLFEENLAPY LVVAPLSTLR NWEREFATWA
0301: PHMNVVMYGG TSQARTVVRD HEFYFPKGHN KMIGISGESR QDRIKFDVIL TSYEMINVDT EVLKPIKWKC MIVDEGHRLK NKNSKLFNSL KQYTSDHRIL
0401: LTGTPLQNNL DELFVLMHFI DGEKFGSLEE FQEQYKDIDQ EEQISRLHKM LSPHLLRRVK KDVLKDMPSK KELILRVDLS SKQKIIYKAI MTRNYKILAK
0501: RGAKISNVLM ELRKACLHPY MVEGVESQIK NENEALKELL ESSGKLQLLD QMMVKLKEQG HRVLIYSQFQ HMLDLLEDYC AYKKWFYERI DGKVNGAERQ
0601: ARIDRFNAKN SNRFCFLLST RAGGVGINLA TADTVFIYDS DWNPYADLQA MARAHRIGQT EKVMIYRLIS RGTIEEKIVQ ICKRKMLLEH LVVGKLKAPN
0701: LSQEELDDII RYGSKELFAE ENDEAGKFGK IHYDDAAIEK LLDRDHIDAE EDSVDDENEN GFFKAFKVAN FEFIDDNEAA ASEEAQDIES KSSSENYWEY
0801: LLKDKYEVQQ AEEVNALGKR KRNCKQKLGE DELAYLEASS DNEEDEQTEA EDELAYLEVS SDDCVASGQG NQIAYWPWTP EDELACFEAS SAYEEAKPMD
0901: GEAARQGNQM AKRPYHRTRD TLEPIPLIEG EGRFLKVLGF NELQRKKFLT TLERYGVGNY DWKEFVDPLK PRTYDEIRSY GLRFLKHIVE DKDVNSPTFS
1001: DGVPKEGLKC KDVLARIASV MLVQKKVKHM EANPTNPVFS DRILHRFPGL RLRRAKFANE ECDRILLSAV SKNGVGKWRA LVNDIEFGIY ELVRKELNIP
1101: PTSFINANGI VKDPDIIITD HMRRRFLILE EAIINEFAED YYFGPKPSSL NRALKNGLLN QPIDFFSAKF RLLTERALHE FASKNISRNL SAIGTYVNVN
1201: MEDERVTEVI VLDD
0101: SWVAEEEFQK AYKFIRRLRS RVIKFHSTME SMSNSGDDFV AIHPEWTTVD RIIDCRGEGE DKEYLVKFKE LSYDECYWES ESDISTFQNE IQRFKDINSG
0201: HRRDKYVDHE RNHEDFKQFD HTPEFITGSL HPYQLEGLNF LRFTWSNRTH VILADEMGLG KTIQSIAFLA SLFEENLAPY LVVAPLSTLR NWEREFATWA
0301: PHMNVVMYGG TSQARTVVRD HEFYFPKGHN KMIGISGESR QDRIKFDVIL TSYEMINVDT EVLKPIKWKC MIVDEGHRLK NKNSKLFNSL KQYTSDHRIL
0401: LTGTPLQNNL DELFVLMHFI DGEKFGSLEE FQEQYKDIDQ EEQISRLHKM LSPHLLRRVK KDVLKDMPSK KELILRVDLS SKQKIIYKAI MTRNYKILAK
0501: RGAKISNVLM ELRKACLHPY MVEGVESQIK NENEALKELL ESSGKLQLLD QMMVKLKEQG HRVLIYSQFQ HMLDLLEDYC AYKKWFYERI DGKVNGAERQ
0601: ARIDRFNAKN SNRFCFLLST RAGGVGINLA TADTVFIYDS DWNPYADLQA MARAHRIGQT EKVMIYRLIS RGTIEEKIVQ ICKRKMLLEH LVVGKLKAPN
0701: LSQEELDDII RYGSKELFAE ENDEAGKFGK IHYDDAAIEK LLDRDHIDAE EDSVDDENEN GFFKAFKVAN FEFIDDNEAA ASEEAQDIES KSSSENYWEY
0801: LLKDKYEVQQ AEEVNALGKR KRNCKQKLGE DELAYLEASS DNEEDEQTEA EDELAYLEVS SDDCVASGQG NQIAYWPWTP EDELACFEAS SAYEEAKPMD
0901: GEAARQGNQM AKRPYHRTRD TLEPIPLIEG EGRFLKVLGF NELQRKKFLT TLERYGVGNY DWKEFVDPLK PRTYDEIRSY GLRFLKHIVE DKDVNSPTFS
1001: DGVPKEGLKC KDVLARIASV MLVQKKVKHM EANPTNPVFS DRILHRFPGL RLRRAKFANE ECDRILLSAV SKNGVGKWRA LVNDIEFGIY ELVRKELNIP
1101: PTSFINANGI VKDPDIIITD HMRRRFLILE EAIINEFAED YYFGPKPSSL NRALKNGLLN QPIDFFSAKF RLLTERALHE FASKNISRNL SAIGTYVNVN
1201: MEDERVTEVI VLDD
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.