Factsheet for Bra040237.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18840	Canola	nucleus	98.27	99.82
AT3G06010.1	Thale cress	nucleus	91.0	90.83
KRH35559	Soybean	nucleus	70.91	72.76
VIT_05s0020g02960.t01	Wine grape	nucleus	72.64	72.44
KRG91253	Soybean	nucleus	70.55	72.32
KRH27613	Soybean	nucleus	69.27	71.68
Solyc01g079690.2.1	Tomato	nucleus	64.09	70.85
TraesCS1A01G087900.1	Wheat	nucleus	51.91	63.16
Zm00001d024816_P007	Maize	cytosol	59.36	58.83
Os05t0144300-01	Rice	nucleus	60.18	58.69
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.64	58.21
Zm00001d006798_P002	Maize	nucleus	58.82	57.97
TraesCS1B01G106900.4	Wheat	nucleus	59.27	57.44
TraesCS1D01G089200.2	Wheat	nucleus	59.36	57.43
GSMUA_Achr6P20210_001	Banana	nucleus	66.64	50.0
GSMUA_Achr8P06840_001	Banana	nucleus	60.73	48.41
Bra012099.1-P	Field mustard	cytosol	23.55	33.59
Bra040221.1-P	Field mustard	nucleus	26.64	27.93
Bra017422.1-P	Field mustard	cytosol	19.27	27.82
Bra002173.1-P	Field mustard	nucleus	26.64	27.54
Bra020751.1-P	Field mustard	nucleus	26.27	27.45
Bra023689.1-P	Field mustard	nucleus	26.0	25.98
Bra037150.1-P	Field mustard	nucleus	23.36	21.43
Bra011311.1-P	Field mustard	nucleus	21.91	19.85
Bra004881.1-P	Field mustard	nucleus	10.82	18.39
Bra007814.1-P	Field mustard	nucleus	22.45	18.1
Bra037208.1-P	Field mustard	nucleus	26.55	17.32
Bra014632.1-P	Field mustard	cytosol	23.18	16.84
Bra007318.1-P	Field mustard	nucleus	21.64	15.91
Bra000409.1-P	Field mustard	plastid	30.18	15.36
Bra039296.1-P	Field mustard	plastid	29.55	15.21
Bra034727.1-P	Field mustard	nucleus	25.09	13.67
Bra027574.1-P	Field mustard	nucleus	23.73	11.75
Bra000114.1-P	Field mustard	nucleus	31.82	10.69

Protein Annotations

MapMan:12.4.1.1.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra040237	EnsemblPlants:Bra040237.1	EnsemblPlants:Bra040237.1-P
ncoils:Coil	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009408	GO:GO:0009414
GO:GO:0009628	GO:GO:0009651	GO:GO:0009653	GO:GO:0009791	GO:GO:0010078	GO:GO:0010231
GO:GO:0010492	GO:GO:0042393	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	UniProt:M4FGK9	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF14619
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF873	SMART:SM00487	SMART:SM00490
SMART:SM01314	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	InterPro:SnAC	UniParc:UPI0002544CE3
SEG:seg	:	:	:	:	:

Description

AT3G06010 (E=0.0) ATCHR12 | ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding

Coordinates

chrA01:+:28264209..28268962

Molecular Weight (calculated)

126321.0 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.663

Length

1100 amino acids

Sequence
(BLAST)

0001: MVAQQLGESS SVVVVESREE PVETTKSLIC ALNYISRDLP LPPHLFAAVS SIYHGSSSSS SLPPSVVPPP PGNDFTPYGG DLMGEFEDAL LKQRTNIESG
0101: SRLTELQDNR NKTLIQRRLS ELEELPSTRG EDLQGKCLLE LYGLKLRELQ SKVRTEVSSE FWLRMNCADV SSQLFDWGMM RLPRLWYGIG DPFATEADDQ
0201: FRKKRDAERV SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL TNLGAAVQRQ KDAKLPDGID PLKDSESDLS ELDAPKGEPL QDLLPDQDID VTESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLKG
0401: GELRSYQIEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FALWVPSIAA YLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIDWHYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: ANVSLTDEEE LLVIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGEY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDILEIYLT LNDFKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EELMRKGTSS LGNDVPSERE
0901: INRLAARSED EFWMFERMDE ERRMKESYRT RLMQEQEVPE WAYTTQSQDD KSNNAKYHFG SVTGKRKRKE IVYSDSLSEV QWMKAVESGE DVSAYSLKQR
1001: RAEKASKAKT STSKRVVEPI QVVSDETSEE EEEEGRGGQE MSGKQRVEKS EEEEEEDGEE ENDEKPIFKW SSHKKKRSRY SFTCSSSDSR AQSSNGSRRN

Best Arabidopsis Sequence Match ( AT3G06010.1 )
(BLAST)

0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK

Arabidopsis Description

CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.