Factsheet for Bra023689.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02609	Canola	nucleus	90.01	93.93
Bra002173.1-P	Field mustard	nucleus	85.47	88.44
AT5G18620.2	Thale cress	nucleus	84.38	86.66
Bra040221.1-P	Field mustard	nucleus	80.93	84.94
Bra020751.1-P	Field mustard	nucleus	80.02	83.67
KRH21031	Soybean	nucleus	79.29	81.82
KRH11241	Soybean	nucleus	79.56	81.72
KRH50913	Soybean	nucleus	78.29	81.47
VIT_05s0020g01780.t01	Wine grape	nucleus	79.56	81.11
KRH02212	Soybean	nucleus	77.75	80.83
PGSC0003DMT400079102	Potato	nucleus	77.29	80.43
Solyc06g054560.2.1	Tomato	nucleus	77.47	80.4
Solyc01g067390.2.1	Tomato	nucleus	77.75	80.38
PGSC0003DMT400058376	Potato	nucleus	77.66	80.36
GSMUA_Achr8P09960_001	Banana	nucleus	76.48	77.89
GSMUA_Achr3P23910_001	Banana	nucleus	74.3	76.52
KXG32501	Sorghum	nucleus	75.84	75.43
Os01t0367900-01	Rice	nucleus	75.57	75.16
Zm00001d040831_P021	Maize	nucleus	75.2	73.93
Zm00001d009312_P028	Maize	nucleus	75.75	73.81
TraesCS1D01G099600.1	Wheat	nucleus	74.11	73.71
TraesCS1B01G118900.2	Wheat	nucleus	73.93	73.6
TraesCS1A01G091100.1	Wheat	nucleus	73.66	73.33
Os05t0150300-01	Rice	nucleus	75.11	71.42
TraesCS3D01G068900.1	Wheat	nucleus	72.21	70.92
TraesCS3B01G083400.1	Wheat	nucleus	72.57	70.46
TraesCS3A01G069900.2	Wheat	nucleus	72.12	70.27
HORVU3Hr1G012850.1	Barley	nucleus	71.48	69.46
HORVU1Hr1G021540.17	Barley	plasma membrane	74.02	69.01
Bra012099.1-P	Field mustard	cytosol	24.25	34.63
Bra040237.1-P	Field mustard	nucleus	25.98	26.0
Bra017422.1-P	Field mustard	cytosol	17.62	25.46
Bra037150.1-P	Field mustard	nucleus	23.61	21.68
Bra004881.1-P	Field mustard	nucleus	12.44	21.17
Bra011311.1-P	Field mustard	nucleus	23.25	21.09
Bra037208.1-P	Field mustard	nucleus	30.88	20.17
Bra007814.1-P	Field mustard	nucleus	24.98	20.15
Bra014632.1-P	Field mustard	cytosol	21.8	15.85
Bra007318.1-P	Field mustard	nucleus	20.8	15.31
Bra034727.1-P	Field mustard	nucleus	25.79	14.07
Bra000409.1-P	Field mustard	plastid	25.07	12.77
Bra039296.1-P	Field mustard	plastid	24.52	12.63
Bra027574.1-P	Field mustard	nucleus	24.34	12.06
Bra000114.1-P	Field mustard	nucleus	26.43	8.89

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra023689
EnsemblPlants:Bra023689.1	EnsemblPlants:Bra023689.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589
GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306
InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	UniProt:M4E4I6	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFscan:PS51192	PFscan:PS51194
PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE
SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224
SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0002543205	SEG:seg	:	:

Description

AT5G18620 (E=3e-274) CHR17 | CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding

Coordinates

chrA02:-:4545003..4551012

Molecular Weight (calculated)

127758.0 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.742

Length

1101 amino acids

Sequence
(BLAST)

0001: MAKASKSEVS SDEAYSSEEE AQVNDQVNVE EDDDEELQAV ARSADSDEEA PASDDEVVPV EDDDDDEDEE DNEKAEISKR EKARLRELQK LKKKKIQDIL
0101: DAQNASIDAD MNNKGKGGLK YLLQQTELFA HFAKSEPSPS QKKGKGRGRR ASKLTEEEED EEYLMEEEGA IPGSGGTRLL TQPSFKYLNV APLYLEMAHN
0201: GEMRDYQLAG LNWLIRLYEN GINGILADEM GLGKTLQTIS LLAYLHEYRG INGPHMIVTP KSTIGNWMNE IRRFCPVLRA VKFLGNPEER RYIREELLVA
0301: GKFDVCVTSF EMAIKEKTTL RRFSWRYIII DEAHRIKNEN SLLSKTMRIF NTNYRLLITG TPLQNNLHEL WALLNFLLPE VFSSAETFDD WFQISGENDQ
0401: QEVVQQLHKV LRPFLLRRLK SDVEKGLPPK KETILKVGMS QMQKQYYKAL LQKDLEVVNG GGERKRLLNI AMQLRKCCNH PYLFQGKMVL LDKLLPKLKE
0501: RDSRVLIFSQ MTRLLDILED YLMYRGYQYC RIDGNTGGDE RDASIEAYNK PGSEKFVFLL STRAGGLGIN LATADIVILY DSDWNPQVDL QAQDRAHRIG
0601: QKKEVQVFRF CTENAIEAKV IERAYKKLAL DALVIQQGRL AEQKTVNKDE LLQMVRYGAE MVFSSKDSTI TDEDIDRIIA KGEEATAELD AKMKKFTEDA
0701: IQFKMDDNAE LYDFDDDNKD ENKFDFKKIV SENWNDPPKR ERKRNYSEAE YFKQTLRPGA PAKPKDPKIP RMPQLHDFQF FNLERLTELY EKEVRHLMQI
0801: HQKTQVKDTV EVDEPEEVGD PLTAEEGFST WSKRDFNTFI RSCEKYGRND IKSIASEMEG KTEEEVERYA QVFKERYKEL SDYDRIIKNI EKGEGRISRK
0901: DEIMKAIGKK LDRYRNPWLE LKIQYGQNKG KLYNEECDRF MVCMVHKVGY GNWEELKTAF KTSPLFSFDW YVKSRSVQEL ARRFETLVRL IEKENQEYDE
1001: RERRARKEKK LATNGTPSKR ALGREAIESP TVLKKRKQLS MDDFVTSIRY DFKSENWSSC DKGRSIILCS QLIVLTTLFD PTFSVARVPS QFPRRDTGKK
1101: L

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.