Factsheet for PGSC0003DMT400058376

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067390.2.1	Tomato	nucleus	98.59	98.5
PGSC0003DMT400079102	Potato	nucleus	88.91	89.41
CDY47176	Canola	cytosol	39.57	88.82
KRH21031	Soybean	nucleus	87.59	87.35
VIT_05s0020g01780.t01	Wine grape	nucleus	88.63	87.31
KRH11241	Soybean	nucleus	87.69	87.03
AT3G06400.3	Thale cress	nucleus	85.62	86.19
KRH50913	Soybean	nucleus	85.06	85.54
Bra040221.1-P	Field mustard	nucleus	84.3	85.51
CDY18857	Canola	nucleus	84.3	85.51
KRH02212	Soybean	nucleus	84.3	84.7
AT5G18620.2	Thale cress	nucleus	85.24	84.61
GSMUA_Achr8P09960_001	Banana	nucleus	85.53	84.18
CDY24695	Canola	nucleus	82.99	83.86
Bra020751.1-P	Field mustard	nucleus	82.99	83.86
CDY13907	Canola	nucleus	82.42	82.81
CDX92595	Canola	nucleus	69.45	82.66
Bra002173.1-P	Field mustard	nucleus	82.52	82.52
GSMUA_Achr3P23910_001	Banana	nucleus	81.86	81.48
KXG32501	Sorghum	nucleus	82.14	78.95
Os01t0367900-01	Rice	nucleus	82.05	78.86
CDY02609	Canola	nucleus	77.73	78.39
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	83.36	78.29
Zm00001d040831_P021	Maize	nucleus	81.95	77.86
Bra023689.1-P	Field mustard	nucleus	80.36	77.66
TraesCS1B01G118900.2	Wheat	nucleus	80.64	77.58
Zm00001d009312_P028	Maize	nucleus	82.33	77.52
TraesCS1D01G099600.1	Wheat	nucleus	80.64	77.51
TraesCS1A01G091100.1	Wheat	nucleus	80.08	77.03
Os05t0150300-01	Rice	nucleus	81.3	74.7
TraesCS3D01G068900.1	Wheat	nucleus	77.26	73.33
TraesCS3B01G083400.1	Wheat	nucleus	77.82	73.02
TraesCS3A01G069900.2	Wheat	nucleus	77.26	72.74
HORVU1Hr1G021540.17	Barley	plasma membrane	80.55	72.57
HORVU3Hr1G012850.1	Barley	nucleus	75.85	71.23
PGSC0003DMT400040011	Potato	cytosol	25.85	36.47
PGSC0003DMT400038561	Potato	cytosol	25.19	35.26
PGSC0003DMT400066819	Potato	cytosol	11.65	33.42
PGSC0003DMT400011842	Potato	nucleus	9.96	15.34
PGSC0003DMT400000170	Potato	nucleus	0.66	4.79

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	EntrezGene:102599561	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818
GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI
InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	UniProt:M1C2K6	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF09110	PFAM:PF09111	EnsemblPlantsGene:PGSC0003DMG400022675	PGSC:PGSC0003DMG400022675	EnsemblPlants:PGSC0003DMT400058376	PFscan:PS51192
PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom
InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI00029560AA	RefSeq:XP_006342770.1	SEG:seg

Description

Helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400022675]

Coordinates

chr1:+:58722503..58735058

Molecular Weight (calculated)

123419.0 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.833

Length

1064 amino acids

Sequence
(BLAST)

0001: MARNRRAKSS SSEPLSDGSE EEQVNDQVND EEDEEELEAV ARSAEDDGDD EAVADREDGD DEDEEEDVGA NEISKREKAR LKDMQRRKKQ KIQEMLDAQN
0101: AAIEADMSNK GKGRLKYLLE QTELFAHFAK GDQSTSEKKT KGRGRHASKI TEEEEDEEYL KEEDGGLSGN TRLLAQPSCI QGKMRDYQLA GLNWMIRLYE
0201: NGINGILADE MGLGKTLQTI SLLAYLHEFR GITGPHMVVA PKSTLGNWMN EIKRFCPIIR AVKFLGNPEE RRYIREDLLV AGKFDVCVTS FEMAIKEKSA
0301: LRRFNWRYII IDEAHRIKNE NSLLSKTMRL YSTNYRLLIT GTPLQNNLHE LWALLNFLLP EIFSSAETFD EWFQISGEND QQEVVQQLHK VLRPFLLRRL
0401: KSDVEKGLPP KKETILKVGM SQMQKNYYRA LLQKDFEVVN SGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGEHL IENAGKMVLL DKLLPKLKER
0501: GSRVLIFSQM TRLLDILEDY LMYRGHQYCR IDGNTGGEDR DASIEAFNSP GSEKFAFLLS TRAGGLGINL ATADIVILYD SDWNPQVDLQ AQDRAHRIGQ
0601: KKEVQVFRFC TEYTIEEKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRFGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA KMKKFTEDAI
0701: KFKMDDTADL YDFEDEKVEN KADFKKIAGD NWIEPPRRER KRNYSESEYF KQTMRPSGPA RPKEPRIPRM PQLHDFQFFN TQRLSELYEK EVRFLMQAHQ
0801: KNQLKDSIEV EEPEDMGDPL TAEEQEEKDK LLEEGFSTWS RRDFNTFIRA CEKYGRNDIE SIAAEMEGKT EEEVERYANV FKERYKELND YDRIIKNIER
0901: GEARISRKDE IMKAIGKKLD RYKNPWLELK IQYGQNKGKL YNEECDRFMI CMVHKLGYGN WDELKAAFRT APLFRFDWFV KSRTTQELAR RCDTLIRLVE
1001: RENQEFDERE RQARKEKKLA KNATPSKRAV ARQAAKSPPT SKKRKQSSMD DYVSSGKRRS DGTT

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.