CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002173.1-P	Field mustard	nucleus	99.24	98.78
CDX92595	Canola	nucleus	83.1	98.43
CDY47176	Canola	cytosol	42.12	94.09
AT5G18620.2	Thale cress	nucleus	91.88	90.76
CDY18857	Canola	nucleus	86.69	87.51
CDY24695	Canola	nucleus	86.78	87.27
CDY02609	Canola	nucleus	84.14	84.45
VIT_05s0020g01780.t01	Wine grape	nucleus	85.46	83.8
KRH21031	Soybean	nucleus	84.42	83.79
KRH11241	Soybean	nucleus	84.51	83.49
PGSC0003DMT400058376	Potato	nucleus	82.81	82.42
Solyc01g067390.2.1	Tomato	nucleus	82.81	82.35
KRH50913	Soybean	nucleus	82.25	82.33
PGSC0003DMT400079102	Potato	nucleus	82.15	82.23
Solyc06g054560.2.1	Tomato	nucleus	82.34	82.19
KRH02212	Soybean	nucleus	81.68	81.68
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	86.69	81.02
GSMUA_Achr8P09960_001	Banana	nucleus	81.3	79.65
GSMUA_Achr3P23910_001	Banana	nucleus	78.38	77.64
Os01t0367900-01	Rice	nucleus	80.08	76.6
KXG32501	Sorghum	nucleus	79.89	76.42
TraesCS1D01G099600.1	Wheat	nucleus	79.13	75.7
TraesCS1B01G118900.2	Wheat	nucleus	78.94	75.59
TraesCS1A01G091100.1	Wheat	nucleus	78.56	75.23
Zm00001d040831_P021	Maize	nucleus	79.32	75.0
Zm00001d009312_P028	Maize	nucleus	79.89	74.87
Os05t0150300-01	Rice	nucleus	79.32	72.54
TraesCS3D01G068900.1	Wheat	nucleus	76.2	71.99
TraesCS3A01G069900.2	Wheat	nucleus	76.39	71.59
TraesCS3B01G083400.1	Wheat	nucleus	76.58	71.52
HORVU1Hr1G021540.17	Barley	plasma membrane	79.23	71.04
HORVU3Hr1G012850.1	Barley	nucleus	74.88	69.99
CDY30755	Canola	cytosol	25.31	34.63
CDY53848	Canola	cytosol	25.12	34.5
CDX81370	Canola	cytosol	24.55	33.94
CDY57125	Canola	cytosol	24.36	33.68
CDY18840	Canola	nucleus	27.48	26.87
CDY18960	Canola	cytosol	22.0	26.81
CDX74702	Canola	cytosol	21.91	26.67
CDY04120	Canola	cytosol	18.51	25.79
CDY48619	Canola	nucleus, plastid	18.41	25.49
CDX75208	Canola	cytosol	25.21	22.32
CDX68802	Canola	cytosol	25.4	22.16
CDY56279	Canola	cytosol	26.63	21.0
CDX76767	Canola	cytosol, nucleus, plastid	26.82	20.64
CDY37209	Canola	nucleus	31.44	19.75
CDX81444	Canola	nucleus	31.54	19.73
CDY67658	Canola	cytosol, nucleus	20.21	18.95
CDY68094	Canola	nucleus	20.49	17.4
CDY30994	Canola	nucleus	9.54	15.78
CDX72050	Canola	cytosol	21.81	15.68
CDX95673	Canola	cytosol	14.54	15.65
CDX88940	Canola	nucleus	23.04	14.75
CDY08401	Canola	nucleus	26.72	14.11
CDY52874	Canola	nucleus	26.82	14.08
CDY37083	Canola	plastid	25.68	12.9
CDY27338	Canola	nucleus, plastid	25.59	12.88
CDX83383	Canola	nucleus, plastid	25.87	12.83
CDY06115	Canola	nucleus	22.0	12.37
CDY14410	Canola	nucleus	26.91	11.39
CDY07678	Canola	nucleus	26.72	10.3
CDX95672	Canola	plastid	6.99	6.85
CDY71637	Canola	nucleus	1.89	2.7

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078FLQ2
UniProt:A0A078FLQ2	EnsemblPlants:CDY13907	ProteinID:CDY13907	ProteinID:CDY13907.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491
GO:GO:0043044	EnsemblPlantsGene:GSBRNA2T00078374001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom
InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111
PFscan:PS51192	PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb
InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0004EDDA27	SEG:seg

Description

BnaC09g39190DBnaC09g39190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLQ2]

Coordinates

chrLK032039:-:100488..106553

Molecular Weight (calculated)

122841.0 Da

IEP (calculated)

6.009

GRAVY (calculated)

-0.834

Length

1059 amino acids

Sequence
(BLAST)

0001: MARASNREVS SDEAYSSSEE DEERVNDQVN VEEDDEELQA VARPADSNEE EEEVAPDEEV VPVEDDADED EEDDEKAEIR KREKARLKEM QKMKKQKIQQ
0101: ILDAQNASID KDMNNKGKGR LTYLLQQTEL FAHFAKSEPS SSQKKGKGRG RHASKLTEEE EDQECLKEEE GGISGSGGTR LLTQPSCIQG KMRDYQLAGL
0201: NWLIRLYENG INGILADEMG LGKTLQTISL LAYLHEFKGI NGPHMIVTPK STIGNWMNEI RRFCPVLRAV KFLGNPEERR YIRDELLVVG KFDVCVTSFE
0301: MAIKEKTSLR RFSWRYIIID EAHRIKNENS LLSKTMRLFS TNYRLLITGT PLQNNLHELW ALLNFLLPEV FRSAETFDEW FQISGENDQQ EVVQQLHKVL
0401: RPFLLRRLKS DVEKGLPPKK ETILKVGLSQ MQKQYYKALL QKDLEVVNGG GERKRLLNIA MQLRKCCNHP YLFQGAEPGP PYTTGDHLVT NSGKMILLDK
0501: LLPKLKERDS RVLIFSQMTR LLDILEDYMI YRGYQYCRID GNTGGDERDA SIEAYNKPGS EKFVFLLSTR AGGLGINLAT ADIVILYDSD WNPQVDLQAQ
0601: DRAHRIGQKK EVQVFRFCTE NAIEEKVIER AYKKLALDAL VIQQGRLAEQ KTVNKDELLQ MVRYGAEMVF SSKDSTITDE DIDRIIAKGE EATAELDAKM
0701: KKFTEDAIQF KMDDPADLYD FDDDNKDENK LDFKKIVSEN WNDPPKRERK RNYSENEYFK QTLRQGAPAK PKEPRIPRMP HLHDFQFFNT QRLTELYEKE
0801: VRHLMQTHQK TQMKDTVEAD EPEEVGDPLT AEEGFPTWSK RDFNSFIRSC EKYGRNDIKS IASEMEGKTD EEVERYAQVF QERYKELNDY DRIIKNIEKG
0901: EGRISRKDEI MKAIGKKLDR YRNPWLELKI QYGQNKGKLY NEECDRFMVC MVHKLGYGNW DELKTAFKTS PLFSFDWFVK SRSSQELARR CDTLIRLIEK
1001: ENQEHDEAER RARRDKKLAK NATPSKRASG SQANESPTVV KKRKQLSMDD FVTSGKRRK

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.