Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014632.1-P | Field mustard | cytosol | 88.91 | 37.58 |
| CDX72050 | Canola | cytosol | 80.62 | 35.03 |
| CDX88940 | Canola | nucleus | 85.62 | 33.13 |
| AT3G57300.2 | Thale cress | cytosol | 77.97 | 32.4 |
| CDY06115 | Canola | nucleus | 80.62 | 27.4 |
| KRH33202 | Soybean | nucleus | 60.94 | 26.73 |
| VIT_08s0007g09020.t01 | Wine grape | nucleus | 64.22 | 26.4 |
| KRH66858 | Soybean | nucleus | 62.81 | 26.24 |
| KRG95191 | Soybean | nucleus | 62.34 | 26.06 |
| Solyc04g016370.2.1 | Tomato | nucleus | 61.88 | 25.73 |
| OQU92590 | Sorghum | nucleus | 53.28 | 24.27 |
| TraesCS4D01G159900.1 | Wheat | nucleus | 55.62 | 23.83 |
| TraesCS4A01G147000.1 | Wheat | nucleus | 55.62 | 23.8 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 54.22 | 23.73 |
| TraesCS4B01G162000.1 | Wheat | nucleus | 55.47 | 23.73 |
| HORVU4Hr1G046140.4 | Barley | nucleus | 56.25 | 23.67 |
| Zm00001d029180_P002 | Maize | nucleus | 56.25 | 23.61 |
| Zm00001d047471_P002 | Maize | nucleus | 55.47 | 22.65 |
| CDY47176 | Canola | cytosol | 14.69 | 19.83 |
| CDY53848 | Canola | cytosol | 16.88 | 14.01 |
| CDY30755 | Canola | cytosol | 16.56 | 13.7 |
| CDY57125 | Canola | cytosol | 15.94 | 13.32 |
| CDX81370 | Canola | cytosol | 15.94 | 13.32 |
| CDY04120 | Canola | cytosol | 15.31 | 12.89 |
| CDY48619 | Canola | nucleus, plastid | 15.31 | 12.81 |
| CDX92595 | Canola | nucleus | 15.94 | 11.41 |
| CDY18840 | Canola | nucleus | 18.12 | 10.71 |
| CDY18960 | Canola | cytosol | 14.38 | 10.59 |
| CDX74702 | Canola | cytosol | 14.38 | 10.57 |
| CDY18857 | Canola | nucleus | 16.88 | 10.3 |
| CDY24695 | Canola | nucleus | 16.25 | 9.88 |
| CDY13907 | Canola | nucleus | 15.78 | 9.54 |
| CDY02609 | Canola | nucleus | 15.47 | 9.38 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 16.41 | 9.27 |
| CDX68802 | Canola | cytosol | 14.84 | 7.83 |
| CDX75208 | Canola | cytosol | 14.53 | 7.78 |
| CDX95672 | Canola | plastid | 12.34 | 7.31 |
| CDY56279 | Canola | cytosol | 15.16 | 7.22 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 15.47 | 7.19 |
| CDY52874 | Canola | nucleus | 21.72 | 6.89 |
| CDY08401 | Canola | nucleus | 21.56 | 6.88 |
| CDY27338 | Canola | nucleus, plastid | 19.84 | 6.04 |
| CDY37083 | Canola | plastid | 19.84 | 6.02 |
| CDX81444 | Canola | nucleus | 15.47 | 5.85 |
| CDY37209 | Canola | nucleus | 15.31 | 5.81 |
| CDX83383 | Canola | nucleus, plastid | 18.59 | 5.57 |
| CDY71637 | Canola | nucleus | 5.16 | 4.46 |
| CDY14410 | Canola | nucleus | 17.19 | 4.39 |
| CDY67658 | Canola | cytosol, nucleus | 7.34 | 4.16 |
| CDY07678 | Canola | nucleus | 17.34 | 4.04 |
| CDY68094 | Canola | nucleus | 7.34 | 3.77 |
| CDX95673 | Canola | cytosol | 1.25 | 0.81 |
Protein Annotations
| MapMan:12.4.3.1 | Gene3D:3.40.50.10810 | GO:A0A078H0Q9 | UniProt:A0A078H0Q9 | EnsemblPlants:CDY30994 | ProteinID:CDY30994 |
| ProteinID:CDY30994.1 | ncoils:Coil | InterPro:DBINO | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006338 |
| GO:GO:0006351 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0031011 | EnsemblPlantsGene:GSBRNA2T00047030001 | InterPro:Helicase_ATP-bd |
| InterPro:IPR014001 | InterPro:IPR020838 | InterPro:IPR038718 | InterPro:Ino80 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF13892 | PFscan:PS51192 | PFscan:PS51413 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF868 | SMART:SM00487 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0004EEC061 | SEG:seg | : |
Description
BnaC04g24300DBnaC04g24300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0Q9]
Coordinates
chrLK032265:+:317860..321751
Molecular Weight (calculated)
73848.0 Da
IEP (calculated)
6.738
GRAVY (calculated)
-0.507
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSRRQSSD SRYANLFNLE PLRNFRIPRH EDEIENYCSG HDETRSNQAN YGNGVKPGIN SSTKKRKWWV RYKVARSYKL PRSAPIRTRK MSIDMLLFWK
101: RFDKQMAEER KKQEKEAAEA LKREQELREA QRQQQRLNFL IKQTELYSHF MQNKTDSKPS ESLSIADENL VDKELREPAA AEPSEVEDPE EAKMKADALK
201: AAQEALRQTS DIEGPPNDVS VSGSGNIDLH NPSTMPATST VQTPELFKGT LKEYQMKGLQ WLVNCYEQGL NGILADEMGL GKTIQAMAFL AHLAEEKNIW
301: GPFLVVAPAS VLNNWSDEIS RFCPDLKTLP YWGGLQERTI LRKNINPKRM YRSYQLLVTD EKYFRRVKWQ YMVLDEAQAI KNSTSIRWKT LLSFNCRNRL
401: LLTGTPIQNN MAELWALLHF IMPMLFDSHE QFNEWFSRWY ASSLVKPAFT SLLSFNVLSC FLIHVQVCNH PELFERNEGS SYLYFGVMSN SLLPPPFGEL
501: EDVHYSSGQN PITYKKEMLQ SSETFCSSIR RGLSRESLLK HFNIYSPEYI LRSIFLSDSS VDQADSGSGA FGFSRLMDLS PSEVGYLALC SVMERLLFSI
601: LKWERQFLDE ISDSVWSSSM MILVEVTSQE VKPELSQECC
101: RFDKQMAEER KKQEKEAAEA LKREQELREA QRQQQRLNFL IKQTELYSHF MQNKTDSKPS ESLSIADENL VDKELREPAA AEPSEVEDPE EAKMKADALK
201: AAQEALRQTS DIEGPPNDVS VSGSGNIDLH NPSTMPATST VQTPELFKGT LKEYQMKGLQ WLVNCYEQGL NGILADEMGL GKTIQAMAFL AHLAEEKNIW
301: GPFLVVAPAS VLNNWSDEIS RFCPDLKTLP YWGGLQERTI LRKNINPKRM YRSYQLLVTD EKYFRRVKWQ YMVLDEAQAI KNSTSIRWKT LLSFNCRNRL
401: LLTGTPIQNN MAELWALLHF IMPMLFDSHE QFNEWFSRWY ASSLVKPAFT SLLSFNVLSC FLIHVQVCNH PELFERNEGS SYLYFGVMSN SLLPPPFGEL
501: EDVHYSSGQN PITYKKEMLQ SSETFCSSIR RGLSRESLLK HFNIYSPEYI LRSIFLSDSS VDQADSGSGA FGFSRLMDLS PSEVGYLALC SVMERLLFSI
601: LKWERQFLDE ISDSVWSSSM MILVEVTSQE VKPELSQECC
0001: MDPSRRPPKD SPYANLFDLE PLMKFRIPKP EDEVDYYGSS SQDESRSTQG GVVANYSNGS KSRMNASSKK RKRWTEAEDA EDDDDLYNQH VTEEHYRSML
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ
0701: LLVTDEKYFR RVKWQYMVLD EAQAIKSSSS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPML FDNHDQFNEW FSKGIENHAE HGGTLNEHQL
0801: NRLHAILKPF MLRRVKKDVV SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GQFTDKKVLN LMNIVIQLRK VCNHPELFER NEGSSYLYFG
0901: VTSNSLLPHP FGELEDVHYS GGQNPIIYKI PKLLHQEVLQ NSETFCSSVG RGISRESFLK HFNIYSPEYI LKSIFPSDSG VDQVVSGSGA FGFSRLMDLS
1001: PSEVGYLALC SVAERLLFSI LRWERQFLDE LVNSLMESKD GDLSDNNIER VKTKAVTRML LMPSKVETNF QKRRLSTGPT RPSFEALVIS HQDRFLSSIK
1101: LLHSAYTYIP KARAPPVSIH CSDRNSAYRV TEELHQPWLK RLLIGFARTS EANGPRKPNS FPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK
1201: LLTDSGKLQT LDILLKRLRA GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQH RSDIFVFLLS TRAGGLGINL TAADTVIFYE
1301: SDWNPTLDLQ AMDRAHRLGQ TKDVTVYRLI CKETVEEKIL HRASQKNTVQ QLVMTGGHVQ GDDFLGAADV VSLLMDDAEA AQLEQKFREL PLQVKDRQKK
1401: KTKRIRIDAE GDATLEELED VDRQDNGQEP LEEPEKPKSS NKKRRAASNP KARAPQKAKE EANGEDTPQR TKRVKRQTKS INESLEPVFS ASVTESNKGF
1501: DPSSSAN
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ
0701: LLVTDEKYFR RVKWQYMVLD EAQAIKSSSS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPML FDNHDQFNEW FSKGIENHAE HGGTLNEHQL
0801: NRLHAILKPF MLRRVKKDVV SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GQFTDKKVLN LMNIVIQLRK VCNHPELFER NEGSSYLYFG
0901: VTSNSLLPHP FGELEDVHYS GGQNPIIYKI PKLLHQEVLQ NSETFCSSVG RGISRESFLK HFNIYSPEYI LKSIFPSDSG VDQVVSGSGA FGFSRLMDLS
1001: PSEVGYLALC SVAERLLFSI LRWERQFLDE LVNSLMESKD GDLSDNNIER VKTKAVTRML LMPSKVETNF QKRRLSTGPT RPSFEALVIS HQDRFLSSIK
1101: LLHSAYTYIP KARAPPVSIH CSDRNSAYRV TEELHQPWLK RLLIGFARTS EANGPRKPNS FPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK
1201: LLTDSGKLQT LDILLKRLRA GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQH RSDIFVFLLS TRAGGLGINL TAADTVIFYE
1301: SDWNPTLDLQ AMDRAHRLGQ TKDVTVYRLI CKETVEEKIL HRASQKNTVQ QLVMTGGHVQ GDDFLGAADV VSLLMDDAEA AQLEQKFREL PLQVKDRQKK
1401: KTKRIRIDAE GDATLEELED VDRQDNGQEP LEEPEKPKSS NKKRRAASNP KARAPQKAKE EANGEDTPQR TKRVKRQTKS INESLEPVFS ASVTESNKGF
1501: DPSSSAN
Arabidopsis Description
INO80DNA helicase INO80-like protein [Source:UniProtKB/TrEMBL;Acc:F4J277]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.