Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007814.1-P | Field mustard | nucleus | 99.93 | 98.31 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 97.69 | 95.35 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 90.84 | 86.52 |
| Solyc08g029120.1.1 | Tomato | nucleus | 38.94 | 74.08 |
| KRH05279 | Soybean | nucleus | 23.16 | 68.65 |
| CDX75208 | Canola | cytosol | 58.67 | 65.89 |
| CDX68802 | Canola | cytosol | 58.9 | 65.16 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 70.44 | 64.27 |
| KRH52357 | Soybean | nucleus | 68.5 | 63.89 |
| KRH61691 | Soybean | nucleus | 68.43 | 63.73 |
| Solyc06g065730.2.1 | Tomato | nucleus | 64.33 | 60.13 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 59.79 | 58.23 |
| KXG19483 | Sorghum | cytosol | 55.92 | 56.72 |
| Zm00001d045109_P008 | Maize | cytosol | 55.1 | 55.47 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 55.7 | 55.2 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 55.62 | 54.97 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 55.03 | 52.6 |
| CDY47176 | Canola | cytosol | 15.41 | 43.67 |
| CDX92595 | Canola | nucleus | 19.66 | 29.53 |
| CDX81370 | Canola | cytosol | 16.75 | 29.37 |
| CDY57125 | Canola | cytosol | 16.75 | 29.37 |
| CDY30755 | Canola | cytosol | 16.38 | 28.42 |
| CDY53848 | Canola | cytosol | 16.31 | 28.4 |
| CDY18857 | Canola | nucleus | 21.15 | 27.07 |
| CDY24695 | Canola | nucleus | 20.92 | 26.69 |
| CDY13907 | Canola | nucleus | 21.0 | 26.63 |
| CDY02609 | Canola | nucleus | 20.4 | 25.97 |
| CDY18960 | Canola | cytosol | 16.68 | 25.78 |
| CDY04120 | Canola | cytosol | 14.45 | 25.53 |
| CDY48619 | Canola | nucleus, plastid | 14.52 | 25.49 |
| CDX74702 | Canola | cytosol | 16.46 | 25.4 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 21.15 | 25.07 |
| CDY67658 | Canola | cytosol, nucleus | 19.29 | 22.94 |
| CDY18840 | Canola | nucleus | 18.24 | 22.62 |
| CDY68094 | Canola | nucleus | 19.81 | 21.33 |
| CDY37209 | Canola | nucleus | 25.09 | 19.99 |
| CDX81444 | Canola | nucleus | 24.94 | 19.79 |
| CDY30994 | Canola | nucleus | 7.22 | 15.16 |
| CDX95673 | Canola | cytosol | 10.8 | 14.74 |
| CDX72050 | Canola | cytosol | 15.93 | 14.53 |
| CDX88940 | Canola | nucleus | 17.35 | 14.09 |
| CDY08401 | Canola | nucleus | 20.33 | 13.62 |
| CDY52874 | Canola | nucleus | 20.25 | 13.49 |
| CDY27338 | Canola | nucleus, plastid | 18.24 | 11.64 |
| CDY37083 | Canola | plastid | 18.17 | 11.57 |
| CDY06115 | Canola | nucleus | 15.86 | 11.31 |
| CDX83383 | Canola | nucleus, plastid | 17.94 | 11.29 |
| CDY14410 | Canola | nucleus | 18.54 | 9.95 |
| CDY07678 | Canola | nucleus | 18.47 | 9.02 |
| CDX95672 | Canola | plastid | 4.32 | 5.37 |
| CDY71637 | Canola | nucleus | 1.34 | 2.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 |
| GO:A0A078IWX8 | UniProt:A0A078IWX8 | EnsemblPlants:CDY56279 | ProteinID:CDY56279 | ProteinID:CDY56279.1 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00018041001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 |
| InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFAM:PF00385 | PFAM:PF00628 | PFAM:PF06461 | PFAM:PF06465 | ScanProsite:PS01359 |
| PFscan:PS50013 | PFscan:PS50016 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 |
| SMART:SM00249 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01146 | SMART:SM01147 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | UniParc:UPI0004EE4648 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaA09g55820DBnaA09g55820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWX8]
Coordinates
chrLK033474:-:18295..26672
Molecular Weight (calculated)
153735.0 Da
IEP (calculated)
5.321
GRAVY (calculated)
-0.637
Length
1343 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSLVERLRL RSDRKPVYNL DESDDEDYAP KKDRTFEQVE AIVRTDAKEN ACQACGESAN LVSCNTCTYA YHAKCLIPPL KDASVENWRC PECVSPLSEM
0101: DKILDCEMRP TISDEQDSSD AAPKPVSVKQ YLVKWKGLSY LHCSWVPEKE FVKAYKTNHR LKTRVNNFHR QKLESSNNNE DDFVAIRPEW TTVDRILAYR
0201: EEDGEEQYLV KYKELSYDEC YWESESDIST FQNEIQRFKD INSRTRRGNK DVDHRRNPKD FQQFDHSPEF LKGLLHPYQL EGLNFLRFSW SKQTHVILAD
0301: EMGLGKTIQS IALLASLFEE NLIPHLVIAP LSTLRNWERE FATWAPQMNV VMYFGTSQAR AVIREHEFYF PKGQQKMKKK KSGQSSSENK QKRIKFDVLL
0401: TSYEMINLDT AVLKPIKWEC MIVDEGHRLK NKDSKLFSSL TQYSSNHRIL LTGTPLQNNL DELFMLMHFL DAGKFGSLEE FQEEFKDINQ EEQISRLHRM
0501: LAPHLLRRVK KDVMKDMPPK KELILRVDLS SEQKEYYKAI LSRNYQVLTK KGGAQISLNN IMMELRKVCC HPYMLEGVEP VIHDANEAFK KLVESCGKLQ
0601: LLDKMMVKLK EQGHRVLIYT QFQHMLDLLE DYCSYKEWSY ERIDGKVGGA ERQIRIDRFN AVNSSRFCFL LSTRAGGLGI NLATADTVII YDSDWNPHAD
0701: LQAMARAHRL GQRNKVMIYR LINRGTIEER MMQLTKKKMV LEHLVVGKLK TQNINQEELD DIIRYGSKEL FASEDDEAGK SGKIHYDDAA IDKLLDRDIV
0801: DAEEVAVDDE EENGFLKAFK VANFEYIDEN EAAALEAQRV AAEKKSSAGE RATYWEELLK DKFEVQQAEE LNALGKRKRS RKQLVSVEED DLAGLEDVSS
0901: DGDESYEADS TDGETPGQGN QTGRRPYRRK GRDNSEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRFGV GNYDWKEFVP RLKQKTYDEI KEYGVLFLKH
1001: IAEDIDENSS TFSDGVPKEG LRIEDVLVRI AVLMLVQEKV KLVEDHPGKP VFPNRILERF PGLRSGKVWK EEHDKIMIRA VLKHGYGRWQ AIVDDKGLGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG SSNLGAQNHG GGVTGNSNAS PADAGQVNSM FYYRDMQRRL VEFVKKRVLL LEKALNYEYA EDYYGLGGSS
1201: SVPSEEPEAE PKVTDTVGAS FIEVDDEMLQ ALPKTEPITS EEIMVAAADN NQERVEIAQL YNKMCKDLDE NARESVQAYV NNQPSNGKLG ESFHTKPNLN
1301: NVEMDSVEET KPLRASVDLN VLEGEENIGE GSGSVDVKME EAK
0101: DKILDCEMRP TISDEQDSSD AAPKPVSVKQ YLVKWKGLSY LHCSWVPEKE FVKAYKTNHR LKTRVNNFHR QKLESSNNNE DDFVAIRPEW TTVDRILAYR
0201: EEDGEEQYLV KYKELSYDEC YWESESDIST FQNEIQRFKD INSRTRRGNK DVDHRRNPKD FQQFDHSPEF LKGLLHPYQL EGLNFLRFSW SKQTHVILAD
0301: EMGLGKTIQS IALLASLFEE NLIPHLVIAP LSTLRNWERE FATWAPQMNV VMYFGTSQAR AVIREHEFYF PKGQQKMKKK KSGQSSSENK QKRIKFDVLL
0401: TSYEMINLDT AVLKPIKWEC MIVDEGHRLK NKDSKLFSSL TQYSSNHRIL LTGTPLQNNL DELFMLMHFL DAGKFGSLEE FQEEFKDINQ EEQISRLHRM
0501: LAPHLLRRVK KDVMKDMPPK KELILRVDLS SEQKEYYKAI LSRNYQVLTK KGGAQISLNN IMMELRKVCC HPYMLEGVEP VIHDANEAFK KLVESCGKLQ
0601: LLDKMMVKLK EQGHRVLIYT QFQHMLDLLE DYCSYKEWSY ERIDGKVGGA ERQIRIDRFN AVNSSRFCFL LSTRAGGLGI NLATADTVII YDSDWNPHAD
0701: LQAMARAHRL GQRNKVMIYR LINRGTIEER MMQLTKKKMV LEHLVVGKLK TQNINQEELD DIIRYGSKEL FASEDDEAGK SGKIHYDDAA IDKLLDRDIV
0801: DAEEVAVDDE EENGFLKAFK VANFEYIDEN EAAALEAQRV AAEKKSSAGE RATYWEELLK DKFEVQQAEE LNALGKRKRS RKQLVSVEED DLAGLEDVSS
0901: DGDESYEADS TDGETPGQGN QTGRRPYRRK GRDNSEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRFGV GNYDWKEFVP RLKQKTYDEI KEYGVLFLKH
1001: IAEDIDENSS TFSDGVPKEG LRIEDVLVRI AVLMLVQEKV KLVEDHPGKP VFPNRILERF PGLRSGKVWK EEHDKIMIRA VLKHGYGRWQ AIVDDKGLGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG SSNLGAQNHG GGVTGNSNAS PADAGQVNSM FYYRDMQRRL VEFVKKRVLL LEKALNYEYA EDYYGLGGSS
1201: SVPSEEPEAE PKVTDTVGAS FIEVDDEMLQ ALPKTEPITS EEIMVAAADN NQERVEIAQL YNKMCKDLDE NARESVQAYV NNQPSNGKLG ESFHTKPNLN
1301: NVEMDSVEET KPLRASVDLN VLEGEENIGE GSGSVDVKME EAK
0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.