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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY56279 Canola cytosol 95.35 97.69
Bra007814.1-P Field mustard nucleus 95.42 96.19
AT2G25170.3 Thale cress endoplasmic reticulum 88.08 85.96
Solyc08g029120.1.1 Tomato nucleus 38.08 74.22
KRH05279 Soybean nucleus 22.67 68.87
CDX75208 Canola cytosol 57.19 65.8
CDX68802 Canola cytosol 57.41 65.07
VIT_04s0008g05880.t01 Wine grape nucleus 68.9 64.4
KRH52357 Soybean nucleus 66.57 63.61
KRH61691 Soybean nucleus 66.5 63.45
Solyc06g065730.2.1 Tomato nucleus 62.43 59.78
GSMUA_Achr4P21270_001 Banana cytosol 58.5 58.38
KXG19483 Sorghum cytosol 54.07 56.19
Zm00001d045109_P008 Maize cytosol 53.42 55.1
TraesCS7B01G050100.3 Wheat nucleus 53.78 54.61
TraesCS7A01G147100.2 Wheat nucleus 53.71 54.38
TraesCS7D01G148900.4 Wheat nucleus 53.12 52.03
CDY47176 Canola cytosol 15.12 43.88
CDX92595 Canola nucleus 19.33 29.75
CDY57125 Canola cytosol 16.21 29.11
CDX81370 Canola cytosol 16.21 29.11
CDY30755 Canola cytosol 15.84 28.17
CDY53848 Canola cytosol 15.77 28.15
CDY18857 Canola nucleus 20.93 27.45
CDY24695 Canola nucleus 20.71 27.07
CDY13907 Canola nucleus 20.64 26.82
CDY02609 Canola nucleus 19.99 26.07
CDY18960 Canola cytosol 16.35 25.89
CDY04120 Canola cytosol 14.24 25.79
CDY48619 Canola nucleus, plastid 14.32 25.75
CDX74702 Canola cytosol 16.13 25.52
CDY05261 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 20.93 25.42
CDY67658 Canola cytosol, nucleus 18.82 22.94
CDY18840 Canola nucleus 17.95 22.81
CDY68094 Canola nucleus 19.33 21.33
CDY37209 Canola nucleus 24.42 19.93
CDX81444 Canola nucleus 24.27 19.73
CDY30994 Canola nucleus 7.19 15.47
CDX72050 Canola cytosol 15.77 14.73
CDX95673 Canola cytosol 10.47 14.63
CDX88940 Canola nucleus 17.15 14.27
CDY08401 Canola nucleus 19.91 13.67
CDY52874 Canola nucleus 19.84 13.54
CDY27338 Canola nucleus, plastid 17.81 11.64
CDY37083 Canola plastid 17.73 11.57
CDY06115 Canola nucleus 15.7 11.47
CDX83383 Canola nucleus, plastid 17.59 11.33
CDY14410 Canola nucleus 18.02 9.91
CDY07678 Canola nucleus 17.95 8.99
CDX95672 Canola plastid 4.36 5.56
CDY71637 Canola nucleus 1.45 2.7
Protein Annotations
Gene3D:1.10.10.60MapMan:12.4.1.1.5Gene3D:2.40.50.40Gene3D:3.30.40.10Gene3D:3.40.50.10810Gene3D:3.40.50.300
GO:A0A078CJ17EnsemblPlants:CDX76767ProteinID:CDX76767ProteinID:CDX76767.1InterPro:Chromo-like_dom_sfInterPro:Chromo/chromo_shadow_dom
InterPro:Chromo_domainncoils:CoilInterPro:DUF1086InterPro:DUF1087GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00127261001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR000953
InterPro:IPR001650InterPro:IPR013083InterPro:IPR014001InterPro:IPR019787InterPro:IPR038718InterPro:P-loop_NTPase
PFAM:PF00176PFAM:PF00271PFAM:PF00385PFAM:PF00628PFAM:PF06461PFAM:PF06465
ScanProsite:PS01359PFscan:PS50013PFscan:PS50016PFscan:PS51192PFscan:PS51194PANTHER:PTHR10799
PANTHER:PTHR10799:SF853SMART:SM00249SMART:SM00298SMART:SM00487SMART:SM00490SMART:SM01146
SMART:SM01147InterPro:SNF2-like_sfInterPro:SNF2_NSUPFAM:SSF52540SUPFAM:SSF54160UniParc:UPI0004EDFC55
InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
BnaC08g33530D
Coordinates
chrLK031808:-:960911..969466
Molecular Weight (calculated)
158179.0 Da
IEP (calculated)
5.625
GRAVY (calculated)
-0.620
Length
1376 amino acids
Sequence
(BLAST)
0001: MICNMHNFKN RNINRTTVIG KNPPCLIIRF WEITSPLKQI PTYLRFLCAE QKKMSSLVER LRLRSDRKPV YNLDESDDED YAPKKDRTFE QVEAIVRTDA
0101: KENACQACGE SANLVSCNTC TYAYHAKCLI PPLKDASVEN WRCPECVSPL SEMDKILDCE MRPTISDEQD SSDAAPKQVS VKQYLVKWKG LSYLHCSWVP
0201: EKEFVKAYKT NHRLKTRVNN FHRQKLESSN NNEDDFVAIR PEWTTVDRIL AYREEDGEEQ YLVKYKELSY DECYWESESD ISTFQNEIQR FKDINSRTRR
0301: GSKDVDHRRN PKDFQQFDHS PEFLKGLLHP YQLEGLNFLR FSWSKQTHVI LADEMGLGKT IQSIALLASL FEENLIPHLV IAPLSTLRNW EREFATWAPQ
0401: MNVVMYFGTS QARAVIREHE FYFPKGQQKM KKKKSGQSSS ENKQKRIKFD VLLTSYEMIN LDTAVLKPIK WECMIVDEGH RLKNKDSKLF SSLTQYSSNH
0501: RILLTGTPLQ NNLDELFMLM HFLDAGKFGS LEEFQEEFKD INQEEQISRL HRMLAPHLLR RVKKDVMKDM PPKKELILRV DLSSEQKEYY KAILSRNYQV
0601: LTKKGGAQIS LNNIMMELRK VCCHPYMLEG VEPVIHDANE AFKKLVESCG KLQLLDKMMV KLKEQGHRVL IYTQFQHMLD LLEDYCSYKE WSYERIDGKV
0701: GGAERQIRID RFNAVNSSRF CFLLSTRAGG LGINLATADT VIIYDSDWNP HADLQAMARA HRLGQRNKVM IYRLINRGTI EERMMQLTKK KMVLEHLVVG
0801: KLKTQNINQE ELDDIIRYGS KELFASEDDE AGKSGKIHYD DAAIDKLLDR DIVDAEEVAV DDEEENGFLK AFKVANFEYI DENEAAALEA QRVAAENKSS
0901: AGERASYWEE LLKDKFEVQQ AEELNALGKR KRSRKQLVSV EEDDLAGLED VSSDGDESYE ADSTDGEAPG QGIQTGRRPY RRKGRDNSEP TPLMEGEGRS
1001: FRVLGFNQSQ RAIFVQTLMR FGVGNYDWKE FVPRLKQKTY DEIKEYGVLF LKHIAEDIDE NSSTFSDGVP KEGLRIEDVL VRIAVLMLVQ EKMKLVEDHP
1101: GKPVFPNRIL ERFPGLRSGK VWKEEHDKIM IRAVLKHGYG RWQAIVDDKG LGIQELICKE LNFPHISFSN LGAQNHGGGV TGNSNASPAD AGQVNSMFYY
1201: RDMQRRLVEF VKKRVLLLEK ALNYEYAEDY YGLGGSSSVP SEEPEAEPKV TDTVGASFIE VDDEMLQALP KTEPITSEEI MVAAADNNQE RVEIAQLYNK
1301: MCKDLDENAR ESVQAYVNNQ PSNGKLDTKP NLNNVEMDSV EETKPLRASV DLNVLEGEEN TGEASGSVDV KMEEAK
Best Arabidopsis Sequence Match ( AT2G25170.2 )
(BLAST)
0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.