Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY56279 | Canola | cytosol | 95.35 | 97.69 |
Bra007814.1-P | Field mustard | nucleus | 95.42 | 96.19 |
AT2G25170.3 | Thale cress | endoplasmic reticulum | 88.08 | 85.96 |
Solyc08g029120.1.1 | Tomato | nucleus | 38.08 | 74.22 |
KRH05279 | Soybean | nucleus | 22.67 | 68.87 |
CDX75208 | Canola | cytosol | 57.19 | 65.8 |
CDX68802 | Canola | cytosol | 57.41 | 65.07 |
VIT_04s0008g05880.t01 | Wine grape | nucleus | 68.9 | 64.4 |
KRH52357 | Soybean | nucleus | 66.57 | 63.61 |
KRH61691 | Soybean | nucleus | 66.5 | 63.45 |
Solyc06g065730.2.1 | Tomato | nucleus | 62.43 | 59.78 |
GSMUA_Achr4P21270_001 | Banana | cytosol | 58.5 | 58.38 |
KXG19483 | Sorghum | cytosol | 54.07 | 56.19 |
Zm00001d045109_P008 | Maize | cytosol | 53.42 | 55.1 |
TraesCS7B01G050100.3 | Wheat | nucleus | 53.78 | 54.61 |
TraesCS7A01G147100.2 | Wheat | nucleus | 53.71 | 54.38 |
TraesCS7D01G148900.4 | Wheat | nucleus | 53.12 | 52.03 |
CDY47176 | Canola | cytosol | 15.12 | 43.88 |
CDX92595 | Canola | nucleus | 19.33 | 29.75 |
CDY57125 | Canola | cytosol | 16.21 | 29.11 |
CDX81370 | Canola | cytosol | 16.21 | 29.11 |
CDY30755 | Canola | cytosol | 15.84 | 28.17 |
CDY53848 | Canola | cytosol | 15.77 | 28.15 |
CDY18857 | Canola | nucleus | 20.93 | 27.45 |
CDY24695 | Canola | nucleus | 20.71 | 27.07 |
CDY13907 | Canola | nucleus | 20.64 | 26.82 |
CDY02609 | Canola | nucleus | 19.99 | 26.07 |
CDY18960 | Canola | cytosol | 16.35 | 25.89 |
CDY04120 | Canola | cytosol | 14.24 | 25.79 |
CDY48619 | Canola | nucleus, plastid | 14.32 | 25.75 |
CDX74702 | Canola | cytosol | 16.13 | 25.52 |
CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 20.93 | 25.42 |
CDY67658 | Canola | cytosol, nucleus | 18.82 | 22.94 |
CDY18840 | Canola | nucleus | 17.95 | 22.81 |
CDY68094 | Canola | nucleus | 19.33 | 21.33 |
CDY37209 | Canola | nucleus | 24.42 | 19.93 |
CDX81444 | Canola | nucleus | 24.27 | 19.73 |
CDY30994 | Canola | nucleus | 7.19 | 15.47 |
CDX72050 | Canola | cytosol | 15.77 | 14.73 |
CDX95673 | Canola | cytosol | 10.47 | 14.63 |
CDX88940 | Canola | nucleus | 17.15 | 14.27 |
CDY08401 | Canola | nucleus | 19.91 | 13.67 |
CDY52874 | Canola | nucleus | 19.84 | 13.54 |
CDY27338 | Canola | nucleus, plastid | 17.81 | 11.64 |
CDY37083 | Canola | plastid | 17.73 | 11.57 |
CDY06115 | Canola | nucleus | 15.7 | 11.47 |
CDX83383 | Canola | nucleus, plastid | 17.59 | 11.33 |
CDY14410 | Canola | nucleus | 18.02 | 9.91 |
CDY07678 | Canola | nucleus | 17.95 | 8.99 |
CDX95672 | Canola | plastid | 4.36 | 5.56 |
CDY71637 | Canola | nucleus | 1.45 | 2.7 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 |
GO:A0A078CJ17 | EnsemblPlants:CDX76767 | ProteinID:CDX76767 | ProteinID:CDX76767.1 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom |
InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00127261001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 |
InterPro:IPR001650 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | InterPro:P-loop_NTPase |
PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | PFAM:PF00628 | PFAM:PF06461 | PFAM:PF06465 |
ScanProsite:PS01359 | PFscan:PS50013 | PFscan:PS50016 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
PANTHER:PTHR10799:SF853 | SMART:SM00249 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01146 |
SMART:SM01147 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | UniParc:UPI0004EDFC55 |
InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaC08g33530D
Coordinates
chrLK031808:-:960911..969466
Molecular Weight (calculated)
158179.0 Da
IEP (calculated)
5.625
GRAVY (calculated)
-0.620
Length
1376 amino acids
Sequence
(BLAST)
(BLAST)
0001: MICNMHNFKN RNINRTTVIG KNPPCLIIRF WEITSPLKQI PTYLRFLCAE QKKMSSLVER LRLRSDRKPV YNLDESDDED YAPKKDRTFE QVEAIVRTDA
0101: KENACQACGE SANLVSCNTC TYAYHAKCLI PPLKDASVEN WRCPECVSPL SEMDKILDCE MRPTISDEQD SSDAAPKQVS VKQYLVKWKG LSYLHCSWVP
0201: EKEFVKAYKT NHRLKTRVNN FHRQKLESSN NNEDDFVAIR PEWTTVDRIL AYREEDGEEQ YLVKYKELSY DECYWESESD ISTFQNEIQR FKDINSRTRR
0301: GSKDVDHRRN PKDFQQFDHS PEFLKGLLHP YQLEGLNFLR FSWSKQTHVI LADEMGLGKT IQSIALLASL FEENLIPHLV IAPLSTLRNW EREFATWAPQ
0401: MNVVMYFGTS QARAVIREHE FYFPKGQQKM KKKKSGQSSS ENKQKRIKFD VLLTSYEMIN LDTAVLKPIK WECMIVDEGH RLKNKDSKLF SSLTQYSSNH
0501: RILLTGTPLQ NNLDELFMLM HFLDAGKFGS LEEFQEEFKD INQEEQISRL HRMLAPHLLR RVKKDVMKDM PPKKELILRV DLSSEQKEYY KAILSRNYQV
0601: LTKKGGAQIS LNNIMMELRK VCCHPYMLEG VEPVIHDANE AFKKLVESCG KLQLLDKMMV KLKEQGHRVL IYTQFQHMLD LLEDYCSYKE WSYERIDGKV
0701: GGAERQIRID RFNAVNSSRF CFLLSTRAGG LGINLATADT VIIYDSDWNP HADLQAMARA HRLGQRNKVM IYRLINRGTI EERMMQLTKK KMVLEHLVVG
0801: KLKTQNINQE ELDDIIRYGS KELFASEDDE AGKSGKIHYD DAAIDKLLDR DIVDAEEVAV DDEEENGFLK AFKVANFEYI DENEAAALEA QRVAAENKSS
0901: AGERASYWEE LLKDKFEVQQ AEELNALGKR KRSRKQLVSV EEDDLAGLED VSSDGDESYE ADSTDGEAPG QGIQTGRRPY RRKGRDNSEP TPLMEGEGRS
1001: FRVLGFNQSQ RAIFVQTLMR FGVGNYDWKE FVPRLKQKTY DEIKEYGVLF LKHIAEDIDE NSSTFSDGVP KEGLRIEDVL VRIAVLMLVQ EKMKLVEDHP
1101: GKPVFPNRIL ERFPGLRSGK VWKEEHDKIM IRAVLKHGYG RWQAIVDDKG LGIQELICKE LNFPHISFSN LGAQNHGGGV TGNSNASPAD AGQVNSMFYY
1201: RDMQRRLVEF VKKRVLLLEK ALNYEYAEDY YGLGGSSSVP SEEPEAEPKV TDTVGASFIE VDDEMLQALP KTEPITSEEI MVAAADNNQE RVEIAQLYNK
1301: MCKDLDENAR ESVQAYVNNQ PSNGKLDTKP NLNNVEMDSV EETKPLRASV DLNVLEGEEN TGEASGSVDV KMEEAK
0101: KENACQACGE SANLVSCNTC TYAYHAKCLI PPLKDASVEN WRCPECVSPL SEMDKILDCE MRPTISDEQD SSDAAPKQVS VKQYLVKWKG LSYLHCSWVP
0201: EKEFVKAYKT NHRLKTRVNN FHRQKLESSN NNEDDFVAIR PEWTTVDRIL AYREEDGEEQ YLVKYKELSY DECYWESESD ISTFQNEIQR FKDINSRTRR
0301: GSKDVDHRRN PKDFQQFDHS PEFLKGLLHP YQLEGLNFLR FSWSKQTHVI LADEMGLGKT IQSIALLASL FEENLIPHLV IAPLSTLRNW EREFATWAPQ
0401: MNVVMYFGTS QARAVIREHE FYFPKGQQKM KKKKSGQSSS ENKQKRIKFD VLLTSYEMIN LDTAVLKPIK WECMIVDEGH RLKNKDSKLF SSLTQYSSNH
0501: RILLTGTPLQ NNLDELFMLM HFLDAGKFGS LEEFQEEFKD INQEEQISRL HRMLAPHLLR RVKKDVMKDM PPKKELILRV DLSSEQKEYY KAILSRNYQV
0601: LTKKGGAQIS LNNIMMELRK VCCHPYMLEG VEPVIHDANE AFKKLVESCG KLQLLDKMMV KLKEQGHRVL IYTQFQHMLD LLEDYCSYKE WSYERIDGKV
0701: GGAERQIRID RFNAVNSSRF CFLLSTRAGG LGINLATADT VIIYDSDWNP HADLQAMARA HRLGQRNKVM IYRLINRGTI EERMMQLTKK KMVLEHLVVG
0801: KLKTQNINQE ELDDIIRYGS KELFASEDDE AGKSGKIHYD DAAIDKLLDR DIVDAEEVAV DDEEENGFLK AFKVANFEYI DENEAAALEA QRVAAENKSS
0901: AGERASYWEE LLKDKFEVQQ AEELNALGKR KRSRKQLVSV EEDDLAGLED VSSDGDESYE ADSTDGEAPG QGIQTGRRPY RRKGRDNSEP TPLMEGEGRS
1001: FRVLGFNQSQ RAIFVQTLMR FGVGNYDWKE FVPRLKQKTY DEIKEYGVLF LKHIAEDIDE NSSTFSDGVP KEGLRIEDVL VRIAVLMLVQ EKMKLVEDHP
1101: GKPVFPNRIL ERFPGLRSGK VWKEEHDKIM IRAVLKHGYG RWQAIVDDKG LGIQELICKE LNFPHISFSN LGAQNHGGGV TGNSNASPAD AGQVNSMFYY
1201: RDMQRRLVEF VKKRVLLLEK ALNYEYAEDY YGLGGSSSVP SEEPEAEPKV TDTVGASFIE VDDEMLQALP KTEPITSEEI MVAAADNNQE RVEIAQLYNK
1301: MCKDLDENAR ESVQAYVNNQ PSNGKLDTKP NLNNVEMDSV EETKPLRASV DLNVLEGEEN TGEASGSVDV KMEEAK
0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.