CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47176	Canola	cytosol	41.33	91.98
Bra023689.1-P	Field mustard	nucleus	93.93	90.01
CDY13907	Canola	nucleus	84.45	84.14
CDX92595	Canola	nucleus	70.33	83.0
AT5G18620.2	Thale cress	nucleus	83.7	82.37
CDY18857	Canola	nucleus	81.61	82.08
CDY24695	Canola	nucleus	80.85	81.01
KRH50913	Soybean	nucleus	79.53	79.3
KRH21031	Soybean	nucleus	80.19	79.29
KRH11241	Soybean	nucleus	80.28	79.01
KRH02212	Soybean	nucleus	78.86	78.56
PGSC0003DMT400079102	Potato	nucleus	78.48	78.26
VIT_05s0020g01780.t01	Wine grape	nucleus	80.09	78.24
Solyc06g054560.2.1	Tomato	nucleus	78.39	77.95
PGSC0003DMT400058376	Potato	nucleus	78.39	77.73
Solyc01g067390.2.1	Tomato	nucleus	78.39	77.65
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	80.95	75.38
GSMUA_Achr8P09960_001	Banana	nucleus	76.97	75.12
GSMUA_Achr3P23910_001	Banana	nucleus	74.88	73.9
KXG32501	Sorghum	nucleus	76.97	73.35
Os01t0367900-01	Rice	nucleus	76.4	72.81
Zm00001d040831_P021	Maize	nucleus	76.68	72.23
TraesCS1B01G118900.2	Wheat	nucleus	75.55	72.06
TraesCS1D01G099600.1	Wheat	nucleus	75.55	72.0
Zm00001d009312_P028	Maize	nucleus	76.97	71.86
TraesCS1A01G091100.1	Wheat	nucleus	75.26	71.79
Os05t0150300-01	Rice	nucleus	76.02	69.26
TraesCS3D01G068900.1	Wheat	nucleus	72.99	68.69
TraesCS3A01G069900.2	Wheat	nucleus	73.08	68.23
TraesCS3B01G083400.1	Wheat	nucleus	73.18	68.08
HORVU3Hr1G012850.1	Barley	nucleus	72.61	67.61
HORVU1Hr1G021540.17	Barley	plasma membrane	75.64	67.57
CDY30755	Canola	cytosol	25.12	34.24
CDY53848	Canola	cytosol	24.93	34.11
CDX81370	Canola	cytosol	24.27	33.42
CDY57125	Canola	cytosol	24.17	33.29
CDY18840	Canola	nucleus	26.64	25.95
CDY18960	Canola	cytosol	20.95	25.43
CDX74702	Canola	cytosol	20.95	25.4
CDY04120	Canola	cytosol	18.01	25.0
CDY48619	Canola	nucleus, plastid	18.1	24.97
CDX75208	Canola	cytosol	24.45	21.57
CDX68802	Canola	cytosol	24.64	21.42
CDY56279	Canola	cytosol	25.97	20.4
CDX76767	Canola	cytosol, nucleus, plastid	26.07	19.99
CDY37209	Canola	nucleus	30.9	19.34
CDX81444	Canola	nucleus	31.0	19.31
CDY67658	Canola	cytosol, nucleus	19.43	18.16
CDY68094	Canola	nucleus	19.81	16.76
CDX95673	Canola	cytosol	14.6	15.65
CDY30994	Canola	nucleus	9.38	15.47
CDX72050	Canola	cytosol	21.23	15.21
CDX88940	Canola	nucleus	22.37	14.27
CDY08401	Canola	nucleus	26.07	13.72
CDY52874	Canola	nucleus	26.16	13.68
CDY37083	Canola	plastid	25.12	12.57
CDY27338	Canola	nucleus, plastid	25.02	12.55
CDX83383	Canola	nucleus, plastid	25.31	12.51
CDY06115	Canola	nucleus	21.14	11.84
CDY14410	Canola	nucleus	26.54	11.19
CDY07678	Canola	nucleus	26.16	10.04
CDX95672	Canola	plastid	6.45	6.3
CDY71637	Canola	nucleus	1.9	2.7

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078EPP0
EnsemblPlants:CDY02609	ProteinID:CDY02609	ProteinID:CDY02609.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006338	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818	GO:GO:0016887
GO:GO:0031491	GO:GO:0043044	EnsemblPlantsGene:GSBRNA2T00114734001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI
InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110
PFAM:PF09111	PFscan:PS51192	PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887
InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0004EEB01A
SEG:seg	:	:	:	:	:

Description

BnaC02g08260D

Coordinates

chrLK031936:+:363563..369363

Molecular Weight (calculated)

123037.0 Da

IEP (calculated)

8.642

GRAVY (calculated)

-0.688

Length

1055 amino acids

Sequence
(BLAST)

0001: MVLSFVGPSI EYLDEEDNEK AEISKREKAR LRELQKMKKK KIRDILDAQN ASIDADMNNR GKGGLKYLLQ QTELFAHFAK SESSRSQKKG KGRGRHASKL
0101: TEEEEDEEYL KEEEGAIPGS GGTRLLTQPA CKYVNVPPLY LEMVHNCASI QGKMRDYQLA GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR
0201: GINGPHMIVT PKSTIGNWMN EIRRFCPVLR AVKFLGNPEE RRYIREELLV AGKFDVCVTS FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRI
0301: FNTNYQLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVVVQQL HKVLRPFLLR RLKSDVEKGL PPKKETILKV GMSQMQKQYY
0401: KALLQKDLEV VNGGGERKRL LNIAMQLRKC CNHPYLFQGK MVLLDKLLPK LKERDSRVLI FSQMTRLLDI LEDYLMYRGY QYCRIDGNTG GDERDASIEA
0501: YNKPGSEKFV FLLSTRAGGL GINLATADIV ILYDSDWNPQ VDLQAQDRAH RIGQKKEVQV FRFCTENAIE AKVIERAYKK LALDALVIQQ GRLAEQKTVN
0601: KDELLQMVRY GAEMVFSSKD STITDEDIDR IIAKGEEATA ELDAKMKKFT EDAIEFKMDD NAELYDFDDD NKDENKFDFK KIVSENWNDP PKRERKRKVT
0701: EYFKQTLRPG APAKPKDPKI PRMPQLHDFQ FFNLERLTEL YEKEVRHLMQ IHQKTQVKDT VEVDEPEEVG DPLTAEEGFS TWSKRDFNTF IRSCEKYGRN
0801: DIKSIASEME GKTEEEVERY AQVFKERYKE LSDYDRIIKN IEKGEGRISR KDENEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMVCMVHK
0901: LGYGNWEELK TAFKTSPSFS FDWYVKSRSG QELARRCETL IRLIEKENQE YDERERRARK EKKLAKNGTP SKRALGREVI ESPTFLKKRK QLSMDDFVTS
1001: IRYDFKSENW SSYDKGRSII LCSQLIVLTV LFDPTFSVYE NLPFQFPRRD NGKKV

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.