CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020751.1-P	Field mustard	nucleus	99.72	99.72
CDY18857	Canola	nucleus	94.49	94.85
AT3G06400.3	Thale cress	nucleus	93.83	93.47
CDY47176	Canola	cytosol	41.79	92.83
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	99.53	92.5
CDY13907	Canola	nucleus	87.27	86.78
CDX92595	Canola	nucleus	73.41	86.47
KRH21031	Soybean	nucleus	86.23	85.1
KRH11241	Soybean	nucleus	86.51	84.98
KRH50913	Soybean	nucleus	85.19	84.78
KRH02212	Soybean	nucleus	84.62	84.14
VIT_05s0020g01780.t01	Wine grape	nucleus	85.75	83.61
PGSC0003DMT400058376	Potato	nucleus	83.86	82.99
Solyc01g067390.2.1	Tomato	nucleus	83.86	82.91
PGSC0003DMT400079102	Potato	nucleus	83.0	82.61
Solyc06g054560.2.1	Tomato	nucleus	83.1	82.47
GSMUA_Achr8P09960_001	Banana	nucleus	83.48	81.31
CDY02609	Canola	nucleus	81.01	80.85
GSMUA_Achr3P23910_001	Banana	nucleus	80.63	79.42
KXG32501	Sorghum	nucleus	81.86	77.87
Os01t0367900-01	Rice	nucleus	81.86	77.87
TraesCS1D01G099600.1	Wheat	nucleus	81.2	77.24
TraesCS1B01G118900.2	Wheat	nucleus	81.1	77.22
TraesCS1A01G091100.1	Wheat	nucleus	80.82	76.94
Zm00001d040831_P021	Maize	nucleus	81.58	76.7
Zm00001d009312_P028	Maize	nucleus	82.05	76.46
Os05t0150300-01	Rice	nucleus	81.67	74.27
TraesCS3D01G068900.1	Wheat	nucleus	77.68	72.97
TraesCS3B01G083400.1	Wheat	nucleus	78.25	72.66
TraesCS3A01G069900.2	Wheat	nucleus	77.68	72.39
HORVU1Hr1G021540.17	Barley	plasma membrane	80.91	72.14
HORVU3Hr1G012850.1	Barley	nucleus	76.73	71.32
CDY30755	Canola	cytosol	25.83	35.14
CDY53848	Canola	cytosol	25.64	35.02
CDY57125	Canola	cytosol	24.98	34.33
CDX81370	Canola	cytosol	24.98	34.33
CDY18840	Canola	nucleus	27.64	26.87
CDY18960	Canola	cytosol	22.13	26.81
CDX74702	Canola	cytosol	21.94	26.55
CDY04120	Canola	cytosol	18.99	26.32
CDY48619	Canola	nucleus, plastid	18.99	26.14
CDX75208	Canola	cytosol	25.45	22.41
CDX68802	Canola	cytosol	25.64	22.24
CDY56279	Canola	cytosol	26.69	20.92
CDX76767	Canola	cytosol, nucleus, plastid	27.07	20.71
CDX81444	Canola	nucleus	32.38	20.14
CDY37209	Canola	nucleus	32.19	20.11
CDY67658	Canola	cytosol, nucleus	20.51	19.13
CDY68094	Canola	nucleus	20.8	17.56
CDY30994	Canola	nucleus	9.88	16.25
CDX72050	Canola	cytosol	22.41	16.02
CDX95673	Canola	cytosol	14.62	15.65
CDX88940	Canola	nucleus	23.55	14.99
CDY08401	Canola	nucleus	27.16	14.26
CDY52874	Canola	nucleus	27.26	14.23
CDY37083	Canola	plastid	25.83	12.9
CDX83383	Canola	nucleus, plastid	26.12	12.88
CDY27338	Canola	nucleus, plastid	25.74	12.88
CDY06115	Canola	nucleus	22.41	12.53
CDY14410	Canola	nucleus	26.88	11.31
CDY07678	Canola	nucleus	26.78	10.26
CDX95672	Canola	plastid	7.22	7.04
CDY71637	Canola	nucleus	2.28	3.24

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	Gene3D:1.20.5.1190	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
GO:A0A078GDT7	UniProt:A0A078GDT7	EnsemblPlants:CDY24695	ProteinID:CDY24695	ProteinID:CDY24695.1	ncoils:Coil
InterPro:DBINO	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818
GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	EnsemblPlantsGene:GSBRNA2T00027079001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR020838	InterPro:IPR036306
InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFAM:PF13892	PFscan:PS51192	PFscan:PS51194
PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE
SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224
SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0004EDEDEB	SEG:seg	:	:

Description

BnaA05g30940DChromatin-remodeling complex ATPase [Source:UniProtKB/TrEMBL;Acc:A0A078GDT7]

Coordinates

chrLK032162:-:494479..500094

Molecular Weight (calculated)

122205.0 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.817

Length

1053 amino acids

Sequence
(BLAST)

0001: MAKFSNRDDA YSSEEDEEHV ENNAGEEEDE EELEAVARSS DSDEEAVPEE SPVSDEEIAP IEDDYEDEED DEKVEIGKRE KARLREMQKV KKQKLQEMLE
0101: SQNASIDADM NNKGKGRLKF LLQQTELFAH FAKGDASSSS QKKVKGRGRH ASKVTEEEED EEYLKEEEGG SAASGNTRLL TQPSCIQGKM RDYQLAGLNW
0201: LIRLYENGIN GILADEMGLG KTLQTISLLA YLHEYRGISG PHMVVAPKST LGNWMNEIRR FCPVLRAVKF LGNPEERRHI REDLLVAGKF DVCVTSFEMA
0301: IKEKTALRRF SWRYIIIDEA HRIKNENSLL SKTMRLFSTN YRLLITGTPL QNNLHELWAL LNFLLPEVFS SAETFDEWFQ ISGENDQQEV VQQLHKVLRP
0401: FLLRRLKSDV EKGLPPKKET ILKVGMSQMQ KQYYKALLQK DLEALNAGGE RKRLLNIAMQ LRKCCNHPYL FQGAEPGPPY TTGDHLITNA GKMVLLDKLL
0501: PKLKERDSRV LIFSQMTRLL DILEDYLMYR GYLYCRIDGN TGGDDRDASI EAYNKPGSEK FVFLLSTRAG GLGINLATAD VVILYDSDWN PQVDLQAQDR
0601: AHRIGQKKEV QVFRFCTESA IEEKVIERAY KKLALDALVI QQGRLAEQKT VNKDELLQMV RYGAEMVFSS KDSTITDEDI DRIIAKGEEA TAELDAKMKK
0701: FTEDAIQFKM DDSADFYDFD DDNKDENKLD FKKIVSDNWN DPPKRERKRN YSEAEYYKQT LRQGAPSKPK EPRIPRMPQL HDFQFFNIQR LTELYEKEVR
0801: YLMQTHQKNQ LKDTVEEEEP EGGDPLTAEE VEEKEALLEE GFSTWNKRDF NSFLRACEKY GRNDITSIAS EMEGKTEEEV ERYAQVFRER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA LGKKLDRYRN PWLEMKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAYRTSPLF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ ELDERERQAR KEKKLAKSAT PSKRPLGGPS ESPSSLKKRK HLR

Best Arabidopsis Sequence Match ( AT3G06400.1 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.