Factsheet for TraesCS1A01G091100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G099600.1	Wheat	nucleus	99.28	99.19
TraesCS1B01G118900.2	Wheat	nucleus	98.64	98.64
HORVU1Hr1G021540.17	Barley	plasma membrane	97.65	91.45
CDY47176	Canola	cytosol	38.34	89.45
Os05t0150300-01	Rice	nucleus	87.79	83.85
CDY18857	Canola	nucleus	77.94	82.17
Bra040221.1-P	Field mustard	nucleus	77.85	82.08
KRH21031	Soybean	nucleus	79.02	81.91
KRH11241	Soybean	nucleus	79.39	81.9
AT3G06400.3	Thale cress	nucleus	78.03	81.65
KRH50913	Soybean	nucleus	77.76	81.29
VIT_05s0020g01780.t01	Wine grape	nucleus	79.29	81.2
Solyc06g054560.2.1	Tomato	nucleus	77.85	81.15
KRH02212	Soybean	nucleus	77.58	81.02
PGSC0003DMT400079102	Potato	nucleus	77.49	81.0
CDY24695	Canola	nucleus	76.94	80.82
Bra020751.1-P	Field mustard	nucleus	76.76	80.63
GSMUA_Achr3P23910_001	Banana	nucleus	77.67	80.36
PGSC0003DMT400058376	Potato	nucleus	77.03	80.08
AT5G18620.2	Thale cress	nucleus	77.58	80.04
Solyc01g067390.2.1	Tomato	nucleus	76.94	79.91
CDX92595	Canola	nucleus	64.01	79.19
Bra002173.1-P	Field mustard	nucleus	75.59	78.57
CDY13907	Canola	nucleus	75.23	78.56
TraesCS3A01G069900.2	Wheat	nucleus	77.94	76.28
CDY02609	Canola	nucleus	71.79	75.26
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	77.03	75.2
Bra023689.1-P	Field mustard	nucleus	73.33	73.66
TraesCS7A01G074600.1	Wheat	cytosol	23.96	35.29
TraesCS2A01G368200.1	Wheat	cytosol	23.15	32.86
TraesCS4A01G261000.1	Wheat	cytosol	24.23	31.98
TraesCS1A01G087900.1	Wheat	nucleus	25.59	31.31
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	24.23	30.73
TraesCS5A01G541400.1	Wheat	cytosol	20.43	25.62
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	17.81	22.67
TraesCS3A01G408500.1	Wheat	nucleus	22.06	21.22
TraesCS2A01G128400.1	Wheat	nucleus	32.46	20.78
TraesCS7A01G147100.2	Wheat	nucleus	25.41	20.68
TraesCS4A01G147000.1	Wheat	nucleus	22.06	16.31
TraesCS7A01G544700.1	Wheat	nucleus	24.86	12.76
TraesCS6A01G034200.2	Wheat	nucleus, plastid	25.5	12.73
TraesCS2A01G227900.1	Wheat	nucleus	25.14	12.38
TraesCS7A01G203600.1	Wheat	nucleus	27.31	8.91

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006338
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818
GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI
InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110
PFAM:PF09111	PFscan:PS51192	PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887
InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1A01G091100
EnsemblPlants:TraesCS1A01G091100.1	TIGR:cd00046	TIGR:cd00079	TIGR:cd00167	SEG:seg	:

Description

No Description!

Coordinates

chr1A:+:82517523..82527706

Molecular Weight (calculated)

126753.0 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.872

Length

1106 amino acids

Sequence
(BLAST)

0001: MGKPAEYGDE EDEELSSSGD AEGEEEQQEE EGSDEGEDEE DEEEEQEPEG EQAAGDGEDA EEEVDEEEIV AATTGGGADD DDDDGGDGAG AAEEAESTED
0101: DAAAEEGGEE DADESEDATA KTEIGKRERA KLREMQKLKK QKIQEILDSQ NASIDADMNK KGKGRLKYLL QQTEIFAHFA KGSQAAEKKN RGKGRHASKV
0201: TEEEEDEEYL KEEDALAAGG TRLLIQPSCI NGKMRDYQLA GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLGYLHEFR GITGPHMVVA PKSTLGNWMK
0301: EIQRFCPVLR AVKFLGNPEE RNHIRENLLA PGKFDVCVTS FEMAIKEKTA LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE
0401: LWSLLNFLLP EIFSSAETFD EWFQISGEND QHEVVQQLHK VLRPFLLRRL KSDVEKGLPP KKETILKVGM SEMQKQYYRA LLQKDLEVIN AGGERKRLLN
0501: IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL IENAGKMVLL DKLLPKLKAR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDDR DASIEAFNKP
0601: GSEKFIFLLS TRAGGLGINL ATADIVVLYD SDWNPQVDLQ AQDRAHRIGQ KKEVQVFRFC TEYTIEEKVI ERAYKKLALD ALVIQQGRLA EQKAVNKDEL
0701: LQMVRFGAEM VFSSKDSTIT DEDIDRIIAR GEEATAQLDA KMKKFTEDAI KFKXXXXAEL YDFDDDKEED KPDFKKLVSD NWIEPPRRER KRNYSESEYF
0801: KQALRQGAPA KPREPRIPRM PNLHDFQFFN TQRLNELYEK EVKYLVQTNQ KKDTIGDGDG EDEEVEPLNE EEQEEKEQLL EEGFSTWTRR DFNTFIRACE
0901: KYGRDDIKSI ASEMEGKTEE EVQRYAEVFK ERYTELNDYD RIIKNIEKGE SKISRKDEIM KAIAKKMDRY KNPWLELKIQ YGQNKGKLYN EECDRFLLCM
1001: VHKLGYGNWE ELKSAFRMSP LFRFDWFVKS RTTQELARRC DTLIRLVEKE NQECDERDRQ ARKDKKNMTP TKRPSSSSPA MDSPMQTPSK RGRRDGSAPL
1101: GKRRRR

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.