Factsheet for Bra002173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92595	Canola	nucleus	83.74	99.66
CDY13907	Canola	nucleus	98.78	99.24
AT5G18620.2	Thale cress	nucleus	91.82	91.14
Bra040221.1-P	Field mustard	nucleus	86.84	88.08
Bra020751.1-P	Field mustard	nucleus	86.37	87.27
Bra023689.1-P	Field mustard	nucleus	88.44	85.47
KRH21031	Soybean	nucleus	84.02	83.79
VIT_05s0020g01780.t01	Wine grape	nucleus	84.96	83.7
KRH11241	Soybean	nucleus	84.12	83.49
Solyc01g067390.2.1	Tomato	nucleus	82.61	82.54
PGSC0003DMT400058376	Potato	nucleus	82.52	82.52
KRH50913	Soybean	nucleus	81.86	82.33
PGSC0003DMT400079102	Potato	nucleus	81.77	82.23
Solyc06g054560.2.1	Tomato	nucleus	81.95	82.19
KRH02212	Soybean	nucleus	81.3	81.68
GSMUA_Achr8P09960_001	Banana	nucleus	81.11	79.83
GSMUA_Achr3P23910_001	Banana	nucleus	78.01	77.64
Os01t0367900-01	Rice	nucleus	79.79	76.69
KXG32501	Sorghum	nucleus	79.61	76.51
TraesCS1D01G099600.1	Wheat	nucleus	79.14	76.06
TraesCS1B01G118900.2	Wheat	nucleus	78.95	75.95
TraesCS1A01G091100.1	Wheat	nucleus	78.57	75.59
Zm00001d040831_P021	Maize	nucleus	79.14	75.18
Zm00001d009312_P028	Maize	nucleus	79.61	74.96
Os05t0150300-01	Rice	nucleus	79.04	72.63
TraesCS3D01G068900.1	Wheat	nucleus	75.85	71.99
TraesCS3B01G083400.1	Wheat	nucleus	76.41	71.69
TraesCS3A01G069900.2	Wheat	nucleus	76.03	71.59
HORVU1Hr1G021540.17	Barley	plasma membrane	79.23	71.38
HORVU3Hr1G012850.1	Barley	nucleus	74.53	69.99
Bra012099.1-P	Field mustard	cytosol	25.19	34.76
Bra040237.1-P	Field mustard	nucleus	27.54	26.64
Bra017422.1-P	Field mustard	cytosol	18.61	25.98
Bra004881.1-P	Field mustard	nucleus	13.63	22.41
Bra011311.1-P	Field mustard	nucleus	25.09	21.99
Bra037150.1-P	Field mustard	nucleus	24.34	21.6
Bra007814.1-P	Field mustard	nucleus	26.41	20.59
Bra037208.1-P	Field mustard	nucleus	31.67	19.99
Bra014632.1-P	Field mustard	cytosol	23.12	16.25
Bra007318.1-P	Field mustard	nucleus	21.99	15.64
Bra034727.1-P	Field mustard	nucleus	26.69	14.07
Bra000409.1-P	Field mustard	plastid	26.22	12.9
Bra039296.1-P	Field mustard	plastid	25.56	12.73
Bra027574.1-P	Field mustard	nucleus	25.85	12.38
Bra000114.1-P	Field mustard	nucleus	27.07	8.79

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra002173
EnsemblPlants:Bra002173.1	EnsemblPlants:Bra002173.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589
GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306
InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	UniProt:M4CD92	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFscan:PS51192	PFscan:PS51194
PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE
SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224
SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0002543768	SEG:seg	:	:

Description

AT5G18620 (E=0.0) CHR17 | CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding

Coordinates

chrA10:+:11086829..11092493

Molecular Weight (calculated)

123292.0 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.821

Length

1064 amino acids

Sequence
(BLAST)

0001: MARASNREVS SDEAYSSSEE DERVNDQVNV EEDDEELQAV ARSADSNEEE EEVAPDEALV SDDEVVPVED DADEDEEDDE KAEIRKREKA RLKEMQKMKR
0101: QKIQEILDAQ NASIDKDMNN KGKGRLTYLL QQTELFAHFA KSEPSSSQKK GKGRGRHASK LTEEEEDQEC LKEEEGGISG SGGTRLLTQP SCIQGKMRDY
0201: QLAGLNWLIR LYENGINGIL ADEMGLGKTL QTISLLAYLH EFKGINGPHM IVTPKSTIGN WMNEIRRFCP VLRAVKFLGN PEERRYIRDE LLVVGKFDVC
0301: VTSFEMAIKE KTSLRRFSWR YIIIDEAHRI KNENSLLSKT MRLFSTNYRL LITGTPLQNN LHELWALLNF LLPEVFSSAE TFDEWFQISG ENDQQEVVQQ
0401: LHKVLRPFLL RRLKSDVEKG LPPKKETILK VGLSQMQKQY YKALLQKDLE VVNGGGERKR LLNIAMQLRK CCNHPYLFQG AEPGPPYTTG DHLVTNSGKM
0501: ILLDKLLPKL KERDSRVLIF SQMTRLLDIL EDYMLYRGYQ YCRIDGNTGG DERDASIEAY NKPGSEKFVF LLSTRAGGLG INLATADIVI LYDSDWNPQV
0601: DLQAQDRAHR IGQKKEVQVF RFCTENAIEE KVIERAYKKL ALDALVIQQG RLAEQKTVNK DELLQMVRYG AEMVFSSKDS TITDEDIDRI IAKGEEATAE
0701: LDAKMKKFTE DAIQFKMDDP ADLYDFDDDN KDENKLDFKK IVSENWNDPP KRERKRNYSE NEYFKQTLRQ GAPAKPKEPR IPRMPHLHDF QFFNTQRLTE
0801: LYEKEVRHLM QTHQKTQMKD TVEADEPEEV GDPLTAEEGF PTWSKRDFNS FIRSCEKYGR NDIKSIASEM EGKTDEEVER YAQVFQERYK ELNDYDRIIK
0901: NIEKGEGRIS RKDEIMKAIG KKLDRYRNPW LELKIQYGQN KGKLYNEECD RFLVCMVHKL GYGNWDELKT AFKTSPLFSF DWFVKSRSSQ ELARRCDTLI
1001: RLIEKENQEH DEAERRARRD KKLAKNATPS KRASGSQANE SPTFVKKRKQ LSMDDFVTSG KRRK

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.