Factsheet for Os05t0150300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47176	Canola	cytosol	36.61	89.45
TraesCS1D01G099600.1	Wheat	nucleus	84.46	88.35
TraesCS1B01G118900.2	Wheat	nucleus	84.37	88.34
Os01t0367900-01	Rice	nucleus	84.28	88.17
TraesCS1A01G091100.1	Wheat	nucleus	83.85	87.79
KRH21031	Soybean	nucleus	77.55	84.16
KRH11241	Soybean	nucleus	77.63	83.86
KRH50913	Soybean	nucleus	76.17	83.36
VIT_05s0020g01780.t01	Wine grape	nucleus	77.46	83.06
CDY18857	Canola	nucleus	75.04	82.84
KRH02212	Soybean	nucleus	75.65	82.72
Bra040221.1-P	Field mustard	nucleus	74.87	82.65
GSMUA_Achr3P23910_001	Banana	nucleus	76.25	82.6
HORVU1Hr1G021540.17	Barley	plasma membrane	84.2	82.56
AT3G06400.3	Thale cress	nucleus	75.04	82.21
CDY24695	Canola	nucleus	74.27	81.67
PGSC0003DMT400079102	Potato	nucleus	74.53	81.57
Solyc06g054560.2.1	Tomato	nucleus	74.7	81.53
Bra020751.1-P	Field mustard	nucleus	74.09	81.48
PGSC0003DMT400058376	Potato	nucleus	74.7	81.3
Solyc01g067390.2.1	Tomato	nucleus	74.61	81.13
AT5G18620.2	Thale cress	nucleus	74.53	80.5
CDX92595	Canola	nucleus	61.31	79.42
CDY13907	Canola	nucleus	72.54	79.32
Bra002173.1-P	Field mustard	nucleus	72.63	79.04
CDY02609	Canola	nucleus	69.26	76.02
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	74.27	75.9
Bra023689.1-P	Field mustard	nucleus	71.42	75.11
Os03t0722400-01	Rice	cytosol	23.58	32.16
Os09t0442700-01	Rice	cytosol	23.4	32.07
Os07t0660200-01	Rice	nucleus	14.85	27.26
Os05t0144300-01	Rice	nucleus	25.04	25.71
Os04t0566100-00	Rice	cytosol	16.93	22.71
Os01t0881000-00	Rice	nucleus	19.0	19.98
Os03t0352500-01	Rice	nucleus	3.54	19.16
Os02t0689800-01	Rice	nucleus	11.23	12.2
Os07t0497100-01	Rice	nucleus	23.4	12.0
Os06t0183800-01	Rice	cytosol, nucleus	2.94	7.71
Os03t0352450-00	Rice	nucleus	2.16	5.45
Os02t0114000-01	Rice	cytosol, nucleus	2.5	4.97
Os02t0114033-00	Rice	nucleus	2.16	2.89
Os06t0255200-02	Rice	cytosol, nucleus, plastid	1.3	2.3

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:4337825
ProteinID:AAV32194.1	ProteinID:BAF16578.1	ProteinID:BAS92298.1	ncoils:Coil	ProteinID:EEE62350.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016589
GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306
InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	EnsemblPlantsGene:Os05g0150300	EnsemblPlants:Os05t0150300-01
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFscan:PS51192
PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	UniProt:Q5WN07	InterPro:SANT/Myb
InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI00004508D2	RefSeq:XP_015639381.1
SEG:seg	:	:	:	:	:

Description

Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1). (Os05t0150300-01)

Coordinates

chr5:+:2874325..2884462

Molecular Weight (calculated)

133529.0 Da

IEP (calculated)

4.573

GRAVY (calculated)

-0.944

Length

1158 amino acids

Sequence
(BLAST)

0001: MGKPGKYGDG DDDDSEEEQL SPSSSAGEEE EEEVEEEEGE EQQEEQGEEE EGFSGDEEEQ EVEGEADGEQ VEEEEEEESS VGEEEAEAEG EEEEEEVEEE
0101: QGAGEEEEEE VDEEEIEAVT TGAGGDDDDE EVGDDGGAEE ESQSTEDDEV AAGKDGGGED GDKLEDATGN AEIGKRERAK LREMQKLKKH KIQEILDAQN
0201: KAIDADMNNK GKGRLKYLLQ QTEIFAHFAK GNQSTEKKSR GRGRHASKMT EEEEDEEYLK EEEDALDGAG GTRLVSQPSC IKGKMRDYQL AGLNWLIRLY
0301: ENGINGILAD EMGLGKTLQT ISLLGYLHEF RGITGPHMVV APKSTLGNWM KEIQRFCPVL RAIKFLGNPE ERNHIRENLL VPGKFDVCVT SFEMAIKEKT
0401: ALKRFSWRYI IIDEAHRIKN ENSLLSKTMR IYNTNYRLLI TGTPLQNNLH ELWSLLNFLL PEIFSSAETF DDWFQISGEN DQHEVVQQLH KVLRPFLLRR
0501: LKSDVEKGLP PKKETILKVG MSEMQKQYYR ALLQKDLEVV NAGGERKRLL NIAMQLRKCC NHPYLFQGAE PGPPYTTGDH LIENAGKMVL LDKLLPKLKE
0601: RDSRVLIFSQ MTRLLDILED YLMYKGYQYC RIDGNTGGED RDASIEAFNK PGSEKFVFLL STRAGGLGIN LATADVVILY DSDWNPQVDL QAQDRAHRIG
0701: QKKEVQVFRF CTEYTIEEKV IERAYKKLAL DALVIQQGRL AEQKAVNKDE LLQMVRFGAE MVFSSKDSTI TDEDIDRIIA KGEEATAQLD AKMKKFTEDA
0801: IKFKMDDTAE LYDFDDDKDE NKLDFKKLVT DNWIEPTSRR ERKRNYSESD YFKQALRQGA PAKPREPRIP RMPHLHDFQF FNTQRLNELY EKEVKYLVQA
0901: NQKKDTVGEG DDEDQLEPLT VEEQEEKEQL LEEGFSTWTR RDFNTFIRAC EKYGRNDIKN ISSEMEGKTE EEVQRYAKVF QERYKELNDY DRVIKNIEKG
1001: EARIYRKDEI MKAIGKKLDR YKNPWLELKI QYGQNKGKLY NEECDRFMLC MVHKLGYGNW DELKAAFRMS PLFRFDWFVK SRTTQELARR CETLIRLVEK
1101: ENQEYDERER LARKDKKNMS PAKRSSSRSL DTPPQSSSKR RRQSYTEANA GSGRRRRG

Best Arabidopsis Sequence Match ( AT3G06400.2 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE EGGDPLTTEE VEEKEGLLEE GFSTWSRRDF NTFLRACEKY GRNDIKSIAS EMEGKTEEEV ERYAKVFKER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA IGKKLDRYRN PWLELKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAFRTSSVF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ EFDERERQAR KEKKLAKSAT PSKRPLGRQA SESPSSTKKR KHLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.