CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92595	Canola	nucleus	94.3	50.0
CDY18857	Canola	nucleus	93.46	42.23
CDY13907	Canola	nucleus	94.09	42.12
AT5G18620.2	Thale cress	nucleus	94.94	41.98
CDY24695	Canola	nucleus	92.83	41.79
CDY02609	Canola	nucleus	91.98	41.33
KRH50913	Soybean	nucleus	90.72	40.64
KRH02212	Soybean	nucleus	90.72	40.6
Solyc06g054560.2.1	Tomato	nucleus	89.66	40.06
PGSC0003DMT400079102	Potato	nucleus	89.03	39.89
KRH11241	Soybean	nucleus	90.08	39.83
KRH21031	Soybean	nucleus	89.45	39.74
Solyc01g067390.2.1	Tomato	nucleus	89.03	39.62
PGSC0003DMT400058376	Potato	nucleus	88.82	39.57
VIT_05s0020g01780.t01	Wine grape	nucleus	89.87	39.44
GSMUA_Achr8P09960_001	Banana	nucleus	89.66	39.32
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	93.04	38.92
TraesCS1B01G118900.2	Wheat	nucleus	89.45	38.34
TraesCS1A01G091100.1	Wheat	nucleus	89.45	38.34
TraesCS1D01G099600.1	Wheat	nucleus	89.45	38.3
GSMUA_Achr3P23910_001	Banana	nucleus	85.44	37.89
Os01t0367900-01	Rice	nucleus	88.4	37.85
KXG32501	Sorghum	nucleus	87.97	37.67
Zm00001d040831_P021	Maize	nucleus	87.55	37.05
Zm00001d009312_P028	Maize	nucleus	88.19	36.99
Os05t0150300-01	Rice	nucleus	89.45	36.61
HORVU3Hr1G012850.1	Barley	nucleus	86.5	36.19
TraesCS3D01G068900.1	Wheat	nucleus	85.44	36.13
HORVU1Hr1G021540.17	Barley	plasma membrane	89.45	35.9
TraesCS3B01G083400.1	Wheat	nucleus	85.86	35.89
TraesCS3A01G069900.2	Wheat	nucleus	85.23	35.75
CDY30755	Canola	cytosol	46.2	28.29
CDY53848	Canola	cytosol	45.78	28.15
CDX81370	Canola	cytosol	45.36	28.07
CDY57125	Canola	cytosol	45.15	27.94
CDY04120	Canola	cytosol	36.5	22.76
CDY48619	Canola	nucleus, plastid	36.71	22.75
CDY18960	Canola	cytosol	38.61	21.06
CDX74702	Canola	cytosol	38.61	21.03
CDY18840	Canola	nucleus	46.41	20.31
CDX75208	Canola	cytosol	40.93	16.22
CDX68802	Canola	cytosol	41.14	16.06
CDY56279	Canola	cytosol	43.67	15.41
CDX76767	Canola	cytosol, nucleus, plastid	43.88	15.12
CDY30994	Canola	nucleus	19.83	14.69
CDY67658	Canola	cytosol, nucleus	32.28	13.55
CDY37209	Canola	nucleus	45.15	12.69
CDX81444	Canola	nucleus	45.15	12.64
CDX72050	Canola	cytosol	38.4	12.36
CDY68094	Canola	nucleus	32.28	12.27
CDX88940	Canola	nucleus	41.14	11.79
CDY08401	Canola	nucleus	41.77	9.88
CDY52874	Canola	nucleus	41.98	9.87
CDX95673	Canola	cytosol	20.04	9.65
CDY06115	Canola	nucleus	37.97	9.56
CDY27338	Canola	nucleus, plastid	41.35	9.32
CDY37083	Canola	plastid	41.35	9.29
CDX83383	Canola	nucleus, plastid	40.51	8.99
CDY14410	Canola	nucleus	44.09	8.35
CDY07678	Canola	nucleus	44.09	7.61
CDX95672	Canola	plastid	10.55	4.63
CDY71637	Canola	nucleus	1.48	0.95

Protein Annotations

MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078IBG0	UniProt:A0A078IBG0	EnsemblPlants:CDY47176
ProteinID:CDY47176	ProteinID:CDY47176.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006325	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016589	GO:GO:0016787	GO:GO:0016887	GO:GO:0043044	EnsemblPlantsGene:GSBRNA2T00086878001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	InterPro:ISWI	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0004EDE90B
SEG:seg	:	:	:	:	:

Description

BnaAnng08460DBnaAnng08460D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078IBG0]

Coordinates

chrLK032702:-:61..2848

Molecular Weight (calculated)

54755.6 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.467

Length

474 amino acids

Sequence
(BLAST)

001: MKDEEDNEKA EISKREKARL REMQKLKKKK IQDILDAQNA SIDADMGKMR DYQLAGLNWL IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP
101: HMIVTPKSTI GNWMNEIRRF CPVLRAVKFL GDPEERRYIR EELLVAGKFD VCVTSFEMAI KEKTTLRRFS WRYIIIDEAH RIKNENSLLS KTMRIFNTNY
201: RLLITGTPLQ NNLHELWALL NFLLPEVFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD
301: LEVVNGGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLVTNAG KMVLLDKLLP KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YQYCRIDGNT
401: GGDERDASIE AYNKPGSEKF VFLLSTRAGG RGINLATADI VILYDMDSGR NPQVDLQAQD RAHRIGQKKE VQVF

Best Arabidopsis Sequence Match ( AT3G06400.1 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.