Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011311.1-P | Field mustard | nucleus | 99.67 | 98.19 |
| CDX68802 | Canola | cytosol | 97.49 | 96.05 |
| Solyc08g029120.1.1 | Tomato | nucleus | 36.45 | 61.76 |
| KRH05279 | Soybean | nucleus | 22.66 | 59.82 |
| CDY56279 | Canola | cytosol | 65.89 | 58.67 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 65.8 | 57.19 |
| AT4G31900.1 | Thale cress | nucleus | 56.69 | 56.41 |
| KRH61691 | Soybean | nucleus | 59.7 | 49.51 |
| KRH52357 | Soybean | nucleus | 59.62 | 49.51 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 60.7 | 49.32 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 55.85 | 48.44 |
| Solyc06g065730.2.1 | Tomato | nucleus | 57.94 | 48.23 |
| KXG19483 | Sorghum | cytosol | 51.59 | 46.6 |
| Zm00001d045109_P008 | Maize | cytosol | 51.0 | 45.73 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 51.67 | 45.61 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 51.51 | 45.33 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 51.42 | 43.77 |
| CDY47176 | Canola | cytosol | 16.22 | 40.93 |
| CDX92595 | Canola | nucleus | 20.9 | 27.96 |
| CDY57125 | Canola | cytosol | 17.81 | 27.81 |
| CDX81370 | Canola | cytosol | 17.73 | 27.68 |
| CDY30755 | Canola | cytosol | 17.81 | 27.52 |
| CDY53848 | Canola | cytosol | 17.73 | 27.5 |
| CDY18960 | Canola | cytosol | 18.81 | 25.89 |
| CDX74702 | Canola | cytosol | 18.73 | 25.75 |
| CDY18857 | Canola | nucleus | 22.58 | 25.74 |
| CDY24695 | Canola | nucleus | 22.41 | 25.45 |
| CDY04120 | Canola | cytosol | 16.05 | 25.26 |
| CDY48619 | Canola | nucleus, plastid | 16.14 | 25.23 |
| CDY13907 | Canola | nucleus | 22.32 | 25.21 |
| CDY02609 | Canola | nucleus | 21.57 | 24.45 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 22.58 | 23.83 |
| CDY18840 | Canola | nucleus | 20.15 | 22.25 |
| CDY67658 | Canola | cytosol, nucleus | 20.4 | 21.61 |
| CDY68094 | Canola | nucleus | 20.4 | 19.57 |
| CDY37209 | Canola | nucleus | 25.92 | 18.39 |
| CDX81444 | Canola | nucleus | 25.75 | 18.19 |
| CDY30994 | Canola | nucleus | 7.78 | 14.53 |
| CDX72050 | Canola | cytosol | 17.39 | 14.12 |
| CDX88940 | Canola | nucleus | 18.9 | 13.66 |
| CDX95673 | Canola | cytosol | 10.95 | 13.31 |
| CDY08401 | Canola | nucleus | 21.99 | 13.12 |
| CDY52874 | Canola | nucleus | 21.99 | 13.04 |
| CDY06115 | Canola | nucleus | 17.47 | 11.1 |
| CDY27338 | Canola | nucleus, plastid | 19.4 | 11.03 |
| CDY37083 | Canola | plastid | 19.31 | 10.95 |
| CDX83383 | Canola | nucleus, plastid | 18.73 | 10.49 |
| CDY14410 | Canola | nucleus | 21.32 | 10.19 |
| CDY07678 | Canola | nucleus | 20.99 | 9.13 |
| CDX95672 | Canola | plastid | 4.68 | 5.19 |
| CDY71637 | Canola | nucleus | 1.59 | 2.57 |
Protein Annotations
| MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078CJF8 | EnsemblPlants:CDX75208 |
| ProteinID:CDX75208 | ProteinID:CDX75208.1 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil |
| InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00121056001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | PFAM:PF06461 |
| PFAM:PF06465 | PFscan:PS50013 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 |
| SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01146 | SMART:SM01147 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | UniParc:UPI0004EF2683 | SEG:seg | : |
Description
BnaA01g04940D
Coordinates
chrLK031804:+:122368..129405
Molecular Weight (calculated)
138630.0 Da
IEP (calculated)
5.495
GRAVY (calculated)
-0.587
Length
1196 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSLAGSRLR KRPDRRPLYT VDDSDDDDDF VQNKDQATEI VEGTVGREAV TPLTEMEKIL DCQMRPTTSN DPDSSDSAAP KQVVVKQYLV KWKGLSYLHC
0101: SWVAEEEFQK AYKFIRRLRS KVIKFHSTME SMSNSGDDFV AIHPEWTTVD RIIDCRGEGE DKEYLVKFKE LSYDECYWES ESDISTFQNE IQRFKDINSG
0201: HRRDKYVDHE RNHEDFKQFD HTPEFITGSL HPYQLEGLNF LRFTWSNRTH VILADEMGLG KTIQSIAFLA SLFEENLAPY LVVAPLSTLR NWEREFATWA
0301: PHMNVVMYGG TSQARTVVRD HEFYFPKESR QDRIKFDVIL TSYEMINVDT EVLKPIKWKC MIVDEGHRLK NKNSKLFNSL KQYTSEHRIL LTGTPLQNNL
0401: DELFVLMHFL DGEKFGSLEE FQEQYKDIDQ EEQISRLHKM LSPHLLRRVK KDVLKDMPSK KELILRVDLS SKQKIIYKAI MTRNYKILAK RGAKISNVLM
0501: ELRKACLHPY MVEGVESQIK DENEALKELL ESSGKLQLLD QMMVKLKEQG HRVLIYSQFQ HMLDLLEDYC AYKKWFYERI DGKVNGAERQ ARIDRFNAKN
0601: SNRFCFLLST RAGGVGINLA TADTVFIYDS DWNPYADLQA MARAHRIGQT EKVMIYRLIS RGTIEEKIVQ ICKRKMLLEH LVVGKLKAPN LSQEELDDII
0701: RYGSKELFAE ENDEAGKFGK IHYDDAAIEK LLDRDHIDAE EDSVDDENEN GFFKAFKVAN FEFIDDNEAA ASEEAQDIES KSSSENYWEY LLKDKYEVQQ
0801: AEEVNALGKR KRNCKQKLGE DELAYLEASS DNEEDEQTEA EDELAYLEVS SDDCVASGQG NQIAYWPWTP ASSAYEEAKP MDGEAARQGN QMAKRPYHRT
0901: RDTLEPIPLI EGEGRFLKVL GFNELQRKKF LTTLERYGVG NYDWKEFVDP LKPRTYDEIR SYGLRFLKHI VEDKDVNSPT FSDGVPKEGL KCKDVLARIA
1001: SVMLVQKKVK HMEANPTNPV FSDRILHRFP GLRLRRAKFA NEECDRILLS AVSKNGVGKW RALVNDIEFG IYELVRKELN IPPTSFINAN GIVKDPDIII
1101: TDHMRRRFLI LEEAIINEFA EDYYFGPKPS SLNRALKNGL LNQPIDFFSA KFRLLTERAL HEFASKNISR NLSAIGTYVN VNMEDERVTE VIVLDD
0101: SWVAEEEFQK AYKFIRRLRS KVIKFHSTME SMSNSGDDFV AIHPEWTTVD RIIDCRGEGE DKEYLVKFKE LSYDECYWES ESDISTFQNE IQRFKDINSG
0201: HRRDKYVDHE RNHEDFKQFD HTPEFITGSL HPYQLEGLNF LRFTWSNRTH VILADEMGLG KTIQSIAFLA SLFEENLAPY LVVAPLSTLR NWEREFATWA
0301: PHMNVVMYGG TSQARTVVRD HEFYFPKESR QDRIKFDVIL TSYEMINVDT EVLKPIKWKC MIVDEGHRLK NKNSKLFNSL KQYTSEHRIL LTGTPLQNNL
0401: DELFVLMHFL DGEKFGSLEE FQEQYKDIDQ EEQISRLHKM LSPHLLRRVK KDVLKDMPSK KELILRVDLS SKQKIIYKAI MTRNYKILAK RGAKISNVLM
0501: ELRKACLHPY MVEGVESQIK DENEALKELL ESSGKLQLLD QMMVKLKEQG HRVLIYSQFQ HMLDLLEDYC AYKKWFYERI DGKVNGAERQ ARIDRFNAKN
0601: SNRFCFLLST RAGGVGINLA TADTVFIYDS DWNPYADLQA MARAHRIGQT EKVMIYRLIS RGTIEEKIVQ ICKRKMLLEH LVVGKLKAPN LSQEELDDII
0701: RYGSKELFAE ENDEAGKFGK IHYDDAAIEK LLDRDHIDAE EDSVDDENEN GFFKAFKVAN FEFIDDNEAA ASEEAQDIES KSSSENYWEY LLKDKYEVQQ
0801: AEEVNALGKR KRNCKQKLGE DELAYLEASS DNEEDEQTEA EDELAYLEVS SDDCVASGQG NQIAYWPWTP ASSAYEEAKP MDGEAARQGN QMAKRPYHRT
0901: RDTLEPIPLI EGEGRFLKVL GFNELQRKKF LTTLERYGVG NYDWKEFVDP LKPRTYDEIR SYGLRFLKHI VEDKDVNSPT FSDGVPKEGL KCKDVLARIA
1001: SVMLVQKKVK HMEANPTNPV FSDRILHRFP GLRLRRAKFA NEECDRILLS AVSKNGVGKW RALVNDIEFG IYELVRKELN IPPTSFINAN GIVKDPDIII
1101: TDHMRRRFLI LEEAIINEFA EDYYFGPKPS SLNRALKNGL LNQPIDFFSA KFRLLTERAL HEFASKNISR NLSAIGTYVN VNMEDERVTE VIVLDD
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.