CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g029120.1.1	Tomato	nucleus	72.85	46.74
KRH61691	Soybean	nucleus	79.25	24.9
KRH52357	Soybean	nucleus	79.03	24.86
VIT_04s0008g05880.t01	Wine grape	nucleus	77.92	23.98
CDY56279	Canola	cytosol	68.65	23.16
Solyc06g065730.2.1	Tomato	nucleus	73.29	23.1
Bra007814.1-P	Field mustard	nucleus	68.65	22.78
CDX76767	Canola	cytosol, nucleus, plastid	68.87	22.67
CDX75208	Canola	cytosol	59.82	22.66
CDX68802	Canola	cytosol	60.26	22.49
AT2G25170.3	Thale cress	endoplasmic reticulum	69.76	22.41
Bra011311.1-P	Field mustard	nucleus	59.38	22.16
GSMUA_Achr4P21270_001	Banana	cytosol	65.56	21.54
AT4G31900.1	Thale cress	nucleus	56.29	21.21
KXG19483	Sorghum	cytosol	58.28	19.94
Zm00001d045109_P008	Maize	cytosol	58.28	19.79
TraesCS7A01G147100.2	Wheat	nucleus	57.84	19.28
TraesCS7B01G050100.3	Wheat	nucleus	57.62	19.26
TraesCS7D01G148900.4	Wheat	nucleus	57.4	18.51
KRH76800	Soybean	cytosol	23.4	13.91
KRH28662	Soybean	cytosol	23.4	13.89
KRH73568	Soybean	nucleus	28.7	13.35
KRG89166	Soybean	nucleus	20.97	12.63
KRH49484	Soybean	nucleus	20.75	12.47
KRH27613	Soybean	nucleus	25.83	11.01
KRH35559	Soybean	nucleus	25.61	10.82
KRG91253	Soybean	nucleus	25.61	10.81
KRH75253	Soybean	cytosol, nucleus, plastid	19.87	10.25
KRH21031	Soybean	nucleus	22.3	9.47
KRH11241	Soybean	nucleus	22.3	9.42
KRH02212	Soybean	nucleus	21.63	9.25
KRH50913	Soybean	nucleus	21.41	9.17
KRH02187	Soybean	nucleus	24.72	8.1
KRH33202	Soybean	nucleus	24.72	7.68
KRG95191	Soybean	nucleus	25.17	7.45
KRH66858	Soybean	nucleus	25.17	7.44
KRH14560	Soybean	nucleus	28.7	7.37
KRH42374	Soybean	nucleus	34.44	7.21
KRH58495	Soybean	nucleus	34.66	6.72
KRH38118	Soybean	nucleus	24.5	5.42
KRH71872	Soybean	nucleus	24.28	5.39
KRH06623	Soybean	nucleus	24.06	4.95
KRH00799	Soybean	nucleus	23.84	4.86
KRH48113	Soybean	nucleus	23.84	4.85
KRH40427	Soybean	nucleus	23.62	4.82
KRH50934	Soybean	nucleus	24.72	2.96

Protein Annotations

Gene3D:2.40.50.40	Gene3D:3.40.50.10810	MapMan:35.1	UniProt:A0A0R0FRY8	EMBL:ACUP02010722	InterPro:Chromo-like_dom_sf
InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G2173001	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR000953	InterPro:IPR014001	InterPro:IPR038718
EnsemblPlants:KRH05279	ProteinID:KRH05279	ProteinID:KRH05279.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00385
PFscan:PS50013	PFscan:PS51192	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	SMART:SM00298	SMART:SM00487
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF54160	UniParc:UPI0006ED579F	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:36658602..36669455

Molecular Weight (calculated)

53202.8 Da

IEP (calculated)

9.352

GRAVY (calculated)

-0.554

Length

453 amino acids

Sequence
(BLAST)

001: MEDIVQGYEW LKLNSLASSN KSMISIKYSN VSSLNNIDKI LDCEKRSGVA CESDATKLGS KQSFVKQYLV KWKGLSYLHC TWVPEEEFLK AFKNHPGLKT
101: KINNFHRHIA SANNPNEDFV AIRPEWTMVD RILACRGHDD KKEYLVKWKE LPYDECYWEL KSDISAFQTE IERFNTFKSR SRKLLSSKKK RSVEDDAELN
201: KQQKEFLQYE HSLQFLSGGA LHSYQLEGLN FLRFSWYKQT HVILADEMGL GKTIQSIAFL ASLFEENVSP HLVVAPLSTL RNWEREFATW APQMNVVMYF
301: GSAKARAFIR EYEFYFPKNQ KRIKKKKSRQ IVNESKQERI KFDVLLTSYE IINSDTSSLK HIKWECMIVD EGHRLKNKDS KLFSSLKQYS SKHRVLLTGT
401: PLQNNLDELF MLMHFLDAGK FGSLEEFQEE FKDINREEQI LRLHKMLAPH LLR

Best Arabidopsis Sequence Match ( AT2G25170.1 )
(BLAST)

0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD

Arabidopsis Description

PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.