CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92178

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	KRG92178	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49484	Soybean	nucleus	96.54	96.29
VIT_01s0010g02080.t01	Wine grape	cytosol	78.19	80.77
AT2G02090.1	Thale cress	cytosol, plastid	73.8	72.74
CDY04120	Canola	cytosol	73.14	72.37
Bra017422.1-P	Field mustard	cytosol	73.27	72.31
CDY48619	Canola	nucleus, plastid	73.4	72.16
Solyc02g014770.2.1	Tomato	nucleus	69.68	71.0
GSMUA_Achr4P25930_001	Banana	cytosol	67.95	63.32
Zm00001d015595_P001	Maize	cytosol	16.36	62.44
Os04t0566100-00	Rice	cytosol	69.28	60.37
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	67.02	58.0
TraesCS2D01G400400.1	Wheat	cytosol	66.62	57.0
TraesCS2B01G421200.3	Wheat	cytosol	66.76	56.34
KXG26914	Sorghum	nucleus	68.35	52.94
Zm00001d002656_P002	Maize	nucleus	67.15	51.58
KRH76800	Soybean	cytosol	26.33	25.98
KRH28662	Soybean	cytosol	26.33	25.95
KRH05279	Soybean	nucleus	12.63	20.97
KRH75253	Soybean	cytosol, nucleus, plastid	22.87	19.59
KRH50913	Soybean	nucleus	27.53	19.57
KRH02212	Soybean	nucleus	27.39	19.45
KRH35559	Soybean	nucleus	27.53	19.31
KRG91253	Soybean	nucleus	27.53	19.29
KRH11241	Soybean	nucleus	27.26	19.12
KRH21031	Soybean	nucleus	27.13	19.12
KRH27613	Soybean	nucleus	26.86	19.0
KRH73568	Soybean	nucleus	19.28	14.89
KRH33202	Soybean	nucleus	28.72	14.8
KRH66858	Soybean	nucleus	28.46	13.97
KRG95191	Soybean	nucleus	28.32	13.91
KRH52357	Soybean	nucleus	26.6	13.89
KRH61691	Soybean	nucleus	26.6	13.87
KRH14560	Soybean	nucleus	28.19	12.02
KRH02187	Soybean	nucleus	21.81	11.86
KRH71872	Soybean	nucleus	30.98	11.42
KRH38118	Soybean	nucleus	30.59	11.22
KRH06623	Soybean	nucleus	27.26	9.31
KRH48113	Soybean	nucleus	27.39	9.25
KRH42374	Soybean	nucleus	26.33	9.15
KRH40427	Soybean	nucleus	26.6	9.0
KRH00799	Soybean	nucleus	26.6	9.0
KRH58495	Soybean	nucleus	26.2	8.44
KRH50934	Soybean	nucleus	27.13	5.38
PGSC0003DMT400011842	Potato	nucleus	3.46	3.76
Os02t0114033-00	Rice	nucleus	3.06	2.66
Os02t0114000-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100806323	MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:ACUP02012188	EnsemblPlantsGene:GLYMA_20G005700
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
UniProt:I1NCZ8	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlants:KRG89166	ProteinID:KRG89166
ProteinID:KRG89166.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF845	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	UniParc:UPI000233DD2D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:542453..551351

Molecular Weight (calculated)

85294.3 Da

IEP (calculated)

4.762

GRAVY (calculated)

-0.413

Length

752 amino acids

Sequence
(BLAST)

001: MKPELYEISD DEWENHSFKP SQVLKRPRTS SPPSPPPIES FAYTSNSKVD VSSENDDDSD CVEIAPESAN FRDNLNDLED ADVDDEPVPA SRGRRFVIDD
101: DDEEDGEEEN GGRDGHVAEL YDVESSEEEE EDVDELNEND VVGRALHKCA RISAELKGEL FGSSGTACER YSEVESSSVR IVTQEDVDVA CGSEEDSDFQ
201: PLLKPYQLVG VNFLLLLYRK GIGGAILADE MGLGKTVQAI TYLTLLKHLH NDSGPHLIVC PASVLENWER ELKRWCPSFS VLQYHGAGRA AYCKELNSLS
301: KAGLPPPFNV LLVCYSLFER HSAQQKDDRK ILKRWRWSCV IMDEAHALKD KNSFRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF MLPDIFASED
401: VDLKKLLNAE DRDLIGRMKS ILGPFILRRL KSDVMQQLVP KIQQVEYVIM EKQQETAYKE AIEEYRAVSQ ARMAKCSDLN SKSVLEVLPR RQINNYFVQF
501: RKIANHPLLI RRIYSDEDVI RFARKLHPMG AFGFECTLDR VIEELKNYND FSIHRLLLHY GVNDRKGILP DKHVMLSAKC RALAELLPSL KEGGHRALIF
601: SQWTSMLDIL EWTLDVIGLT YKRLDGSTQV AERQTIVDTF NNDTSIFACL LSTRAGGQGL NLTGADTVVI HDMDFNPQID RQAEDRCHRI GQTKPVTIHR
701: LVTKGTVDEN VYEIAKRKLV LDAAVLESME EINEGELPEK TMGEILSAIL LS

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.