Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G400400.1 | Wheat | cytosol | 96.86 | 98.18 |
| TraesCS2A01G403300.2 | Wheat | cytosol, nucleus | 95.51 | 97.93 |
| Os04t0566100-00 | Rice | cytosol | 79.01 | 81.58 |
| KXG26914 | Sorghum | nucleus | 76.21 | 69.93 |
| Zm00001d002656_P002 | Maize | nucleus | 75.87 | 69.05 |
| VIT_01s0010g02080.t01 | Wine grape | cytosol | 55.56 | 67.99 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 61.05 | 67.41 |
| KRG89166 | Soybean | nucleus | 56.34 | 66.76 |
| KRH49484 | Soybean | nucleus | 56.0 | 66.18 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 55.89 | 65.27 |
| Bra017422.1-P | Field mustard | cytosol | 55.78 | 65.22 |
| CDY04120 | Canola | cytosol | 55.44 | 65.0 |
| CDY48619 | Canola | nucleus, plastid | 55.56 | 64.71 |
| Solyc02g014770.2.1 | Tomato | nucleus | 53.42 | 64.5 |
| TraesCS2B01G385300.1 | Wheat | cytosol | 23.12 | 25.15 |
| TraesCS4B01G053600.1 | Wheat | cytosol, plastid | 23.34 | 22.96 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 24.02 | 18.85 |
| TraesCS4B01G372600.1 | Wheat | cytosol | 18.52 | 18.71 |
| TraesCS3B01G083400.1 | Wheat | nucleus | 22.9 | 17.99 |
| TraesCS1B01G118900.2 | Wheat | nucleus | 22.11 | 17.81 |
| TraesCS3B01G442200.1 | Wheat | nucleus | 22.11 | 17.12 |
| TraesCS4B01G162000.1 | Wheat | nucleus | 24.58 | 14.64 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 20.88 | 13.73 |
| TraesCS2B01G150500.1 | Wheat | nucleus | 21.66 | 11.17 |
| TraesCS7B01G468100.1 | Wheat | nucleus | 25.25 | 10.36 |
| TraesCS6B01G048200.2 | Wheat | nucleus, plastid | 22.22 | 8.96 |
| TraesCS2B01G251900.1 | Wheat | nucleus | 22.45 | 8.92 |
| TraesCS7B01G110600.1 | Wheat | nucleus | 23.57 | 6.21 |
| PGSC0003DMT400011842 | Potato | nucleus | 2.81 | 3.62 |
Protein Annotations
| MapMan:12.4.1.2.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF845 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| EnsemblPlantsGene:TraesCS2B01G421200 | EnsemblPlants:TraesCS2B01G421200.3 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:-:606038668..606046816
Molecular Weight (calculated)
99575.1 Da
IEP (calculated)
4.853
GRAVY (calculated)
-0.498
Length
891 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRDFEEISD DEWSNHTFKP SRVLKRPHRS PQPPARPPPP IDSFRYDPKA SSAVGTSNGA AVVLSDDDDD DDDFDLGKSV KARRAEDSSR VLKRPQHKSP
101: PRRATPSTQS SRHNPKPSKA AIVAALSDDD FEPEDEFDPE DDDFDLPASR RSRPRPSTGR RLATATIDLS EEEEDLDLTF EDSDLADDDS DLADDDSDHP
201: APRSSRPRRT TGRRFVIEDD DDSDGSVAAG VVEVGDEEED DGVNWSELEN EDDEDGDYNG QSSVKADEVE GDVVGKALRR CSRISVDLRQ ELYGSSARNC
301: ESYAETDAST VRIVTQEDVD AACTSEDMEF NPVLKPYQLV GVNFLLLLHQ KGIGGAILAD EMGLGKTVQA VTYLNLLQHL YDDPGPHLIV CPASVLENWE
401: RELKKWCPSF SIIMFHGAGR TAFSKELSSL GKAGCPAPFN VLLVGYSLFE RRSAQQKDDR KALKRWKWSC VLMDEAHVLK DKGSFRWKNL MAVAQHAHQR
501: LMLTGTPLQN DLHELWSLLE LMMPDIFATG EVDLKKLLNS EDHELISRIK SILGPFILRR LKSDVMQQLV PKTQHVNFVS MGSEQLKAYN GAANEYRAIC
601: EARTAKSSGQ YPQNVVGLIP KRQISNYFMQ LRKGFSLLPQ IANHPLLIRR IYSDKDVDRI ARLTYPKGAF GFECSFDRAI QALKNYNDFA IHQLLITHGD
701: AGTKGALKDE HVFASAKCQA LAELLPSLTN NGHRVLIFSQ WTTMLDILEW ALEVIGITYR RLDGGTPVIE RQTIVDTFNN DLSINACLLS TRAGGQGLNL
801: IGADTVIIHD MDFNPQMDRQ AEDRCHRIGQ QKPVTIYRLV TKESVDESIY AIARRKLVLD AAVLQSGADL DDRTDVPEQT MGEILASLLL V
101: PRRATPSTQS SRHNPKPSKA AIVAALSDDD FEPEDEFDPE DDDFDLPASR RSRPRPSTGR RLATATIDLS EEEEDLDLTF EDSDLADDDS DLADDDSDHP
201: APRSSRPRRT TGRRFVIEDD DDSDGSVAAG VVEVGDEEED DGVNWSELEN EDDEDGDYNG QSSVKADEVE GDVVGKALRR CSRISVDLRQ ELYGSSARNC
301: ESYAETDAST VRIVTQEDVD AACTSEDMEF NPVLKPYQLV GVNFLLLLHQ KGIGGAILAD EMGLGKTVQA VTYLNLLQHL YDDPGPHLIV CPASVLENWE
401: RELKKWCPSF SIIMFHGAGR TAFSKELSSL GKAGCPAPFN VLLVGYSLFE RRSAQQKDDR KALKRWKWSC VLMDEAHVLK DKGSFRWKNL MAVAQHAHQR
501: LMLTGTPLQN DLHELWSLLE LMMPDIFATG EVDLKKLLNS EDHELISRIK SILGPFILRR LKSDVMQQLV PKTQHVNFVS MGSEQLKAYN GAANEYRAIC
601: EARTAKSSGQ YPQNVVGLIP KRQISNYFMQ LRKGFSLLPQ IANHPLLIRR IYSDKDVDRI ARLTYPKGAF GFECSFDRAI QALKNYNDFA IHQLLITHGD
701: AGTKGALKDE HVFASAKCQA LAELLPSLTN NGHRVLIFSQ WTTMLDILEW ALEVIGITYR RLDGGTPVIE RQTIVDTFNN DLSINACLLS TRAGGQGLNL
801: IGADTVIIHD MDFNPQMDRQ AEDRCHRIGQ QKPVTIYRLV TKESVDESIY AIARRKLVLD AAVLQSGADL DDRTDVPEQT MGEILASLLL V
001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG
Arabidopsis Description
ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.