CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28662	Soybean	cytosol	94.88	94.76
VIT_04s0023g01610.t01	Wine grape	cytosol	74.67	74.97
PGSC0003DMT400040011	Potato	cytosol	73.36	74.14
PGSC0003DMT400038561	Potato	cytosol	71.52	71.71
Solyc02g062780.2.1	Tomato	cytosol	72.18	71.34
CDY53848	Canola	cytosol	70.73	69.91
Bra012099.1-P	Field mustard	cytosol	70.6	69.78
CDY30755	Canola	cytosol	70.6	69.51
CDY57125	Canola	cytosol	69.55	69.19
AT5G66750.1	Thale cress	cytosol	69.29	69.11
CDX81370	Canola	cytosol	69.42	69.06
GSMUA_Achr3P26090_001	Banana	cytosol	67.06	67.33
Solyc02g085390.2.1	Tomato	cytosol	71.39	67.08
TraesCS7A01G074600.1	Wheat	cytosol	61.68	62.58
EER97913	Sorghum	cytosol	63.25	61.95
TraesCS7D01G069700.1	Wheat	cytosol	63.25	61.87
Zm00001d007978_P003	Maize	cytosol	63.91	61.8
TraesCS2A01G368200.1	Wheat	cytosol	62.2	60.85
EER93549	Sorghum	cytosol	64.57	58.85
TraesCS4D01G053600.2	Wheat	cytosol	64.44	58.8
TraesCS4A01G261000.1	Wheat	cytosol	64.17	58.35
Os03t0722400-01	Rice	cytosol	64.96	58.3
TraesCS2B01G385300.1	Wheat	cytosol	62.6	58.24
Os09t0442700-01	Rice	cytosol	64.57	58.22
TraesCS2D01G365000.1	Wheat	cytosol	62.6	58.1
Zm00001d033827_P006	Maize	cytosol	64.04	57.55
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	63.12	55.16
TraesCS4B01G053600.1	Wheat	cytosol, plastid	63.91	53.75
Bra037150.1-P	Field mustard	nucleus	69.55	44.2
KRH49484	Soybean	nucleus	26.51	26.79
KRG89166	Soybean	nucleus	25.98	26.33
KRH02212	Soybean	nucleus	35.3	25.4
KRH50913	Soybean	nucleus	35.17	25.33
KRH21031	Soybean	nucleus	35.43	25.3
KRH11241	Soybean	nucleus	35.3	25.09
KRH05279	Soybean	nucleus	13.91	23.4
KRH35559	Soybean	nucleus	32.02	22.76
KRH27613	Soybean	nucleus	31.63	22.67
KRG91253	Soybean	nucleus	31.63	22.46
KRH75253	Soybean	cytosol, nucleus, plastid	25.07	21.75
KRH73568	Soybean	nucleus	21.78	17.04
KRH33202	Soybean	nucleus	30.32	15.83
KRH52357	Soybean	nucleus	29.66	15.69
KRH61691	Soybean	nucleus	29.66	15.67
KRG95191	Soybean	nucleus	31.1	15.48
KRH66858	Soybean	nucleus	30.97	15.4
KRH14560	Soybean	nucleus	32.94	14.23
KRH02187	Soybean	nucleus	24.8	13.67
KRH38118	Soybean	nucleus	31.5	11.71
KRH71872	Soybean	nucleus	31.36	11.71
KRH42374	Soybean	nucleus	32.02	11.28
KRH58495	Soybean	nucleus	32.02	10.45
KRH48113	Soybean	nucleus	28.74	9.84
KRH06623	Soybean	nucleus	28.35	9.8
KRH40427	Soybean	nucleus	28.08	9.63
KRH00799	Soybean	nucleus	28.08	9.63
KRH50934	Soybean	nucleus	32.94	6.62

Protein Annotations

EntrezGene:100777687	MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:ACUP02000642	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G175300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	UniProt:I1J8V7	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlants:KRH76800
ProteinID:KRH76800	ProteinID:KRH76800.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI00023BDFB7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:51182831..51189269

Molecular Weight (calculated)

87148.6 Da

IEP (calculated)

5.648

GRAVY (calculated)

-0.497

Length

762 amino acids

Sequence
(BLAST)

001: MEAKDKVKNE DSAAESPTSV LEDEDVCALK EEVKLEEMVT ADVKDDGSSL ISKTMVEEEE KLLEARIKEE EVQYEEAVDL NDIQFNKLDE LLTQTRLYSE
101: FLLEKMDDIT LAVGEQENRE EQESNPSAKK GRGSKRKVAS QYNTRKAKKA VAAMLTRSKE SEKTEDMNMT EEERVEKEQK ELMPLLTGGK LKNYQLKGVK
201: WLISLWQNGL NGILADQMGL GKTIQTIGFL SHLKAKGLDG PYMIIAPLST LSNWVNEISR FAPSLPAVIY HGDKKQRDDI RRKHMPTRTI GPQFPIVITS
301: YEIALNDAKK YFRSYNWKYL VVDEGHRLKN SQCKLVKALK FINVENKLLL TGTPLQNNLA ELWSLLNFIL PDIFASLEEF ESWFNLSGKS NNGATKEELE
401: EKRRSQVVAK LHAILRPFLL RRMKSDVEIM LPRKKEIIIY ANMTEHQKNL QDHLVNKTLG NYLKENMSSG RSVPAGMIRN LAIQLRKVCN HPDLLESAFD
501: DSYLYPPLEE IVGQCGKFHL LDRLLQRLFA RNHKVLIFSQ WTKVLDIMDY YFSEKGFEVC RIDGGVKLDE RKQQIQDFND VNSNCRVFLL STRAGGLGIN
601: LTAADTCILY DSDWNPQMDL QAMDRCHRIG QTKPVHVYRL STAQSIEGRM LKRAFSKLKL EHVVIEKGQF HQERTKPASM DEIEEDDVLA LLRDEETAED
701: KMIHTDISDE DLEKLLDRSD LIVNDFNDDN FKAPVSVFPL KGPGWEVVIP TATGGMLSTL NS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.