Factsheet for VIT_04s0023g01610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040011	Potato	cytosol	78.13	78.65
PGSC0003DMT400038561	Potato	cytosol	76.94	76.84
Solyc02g062780.2.1	Tomato	cytosol	77.34	76.13
KRH76800	Soybean	cytosol	74.97	74.67
KRH28662	Soybean	cytosol	74.18	73.79
Bra012099.1-P	Field mustard	cytosol	73.78	72.63
CDY53848	Canola	cytosol	73.65	72.5
CDY30755	Canola	cytosol	73.91	72.48
AT5G66750.1	Thale cress	cytosol	72.86	72.38
Solyc02g085390.2.1	Tomato	cytosol	77.34	72.38
CDY57125	Canola	cytosol	72.99	72.32
CDX81370	Canola	cytosol	72.86	72.19
GSMUA_Achr3P26090_001	Banana	cytosol	69.17	69.17
EER97913	Sorghum	cytosol	67.06	65.42
TraesCS7A01G074600.1	Wheat	cytosol	64.56	65.25
TraesCS7D01G069700.1	Wheat	cytosol	66.67	64.96
Zm00001d007978_P003	Maize	cytosol	66.67	64.21
TraesCS2A01G368200.1	Wheat	cytosol	65.09	63.41
EER93549	Sorghum	cytosol	68.38	62.08
Os03t0722400-01	Rice	cytosol	69.17	61.84
TraesCS4D01G053600.2	Wheat	cytosol	67.98	61.8
TraesCS4A01G261000.1	Wheat	cytosol	67.98	61.58
Os09t0442700-01	Rice	cytosol	68.38	61.42
Zm00001d033827_P006	Maize	cytosol	68.38	61.2
TraesCS2B01G385300.1	Wheat	cytosol	65.61	60.81
TraesCS2D01G365000.1	Wheat	cytosol	65.74	60.78
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	66.8	58.14
TraesCS4B01G053600.1	Wheat	cytosol, plastid	67.72	56.73
Bra037150.1-P	Field mustard	nucleus	72.99	46.21
VIT_01s0010g02080.t01	Wine grape	cytosol	26.61	27.75
VIT_05s0020g01780.t01	Wine grape	nucleus	37.02	26.02
VIT_15s0021g02180.t01	Wine grape	cytosol	26.48	23.51
VIT_05s0020g02960.t01	Wine grape	nucleus	32.94	22.67
VIT_04s0008g05880.t01	Wine grape	nucleus	30.83	15.9
VIT_08s0007g09020.t01	Wine grape	nucleus	32.15	15.67
VIT_06s0009g03750.t01	Wine grape	nucleus	33.73	14.52
VIT_08s0007g06370.t01	Wine grape	nucleus	31.49	11.65
VIT_01s0011g01480.t01	Wine grape	nucleus	30.3	10.66
VIT_15s0046g02290.t01	Wine grape	plastid	30.43	10.21
VIT_05s0020g02020.t01	Wine grape	nucleus	29.12	8.26

Protein Annotations

EntrezGene:100263333	wikigene:100263333	MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:AM446207
ProteinID:CAN72008	ProteinID:CAN72008.1	ProteinID:CCB44458	ProteinID:CCB44458.1	ncoils:Coil	UniProt:F6GWX2
EMBL:FN594959	GO:GO:0000166	GO:GO:0000786	GO:GO:0003674	GO:GO:0003824	GO:GO:0004003
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006344	GO:GO:0006346	GO:GO:0006349	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009294	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016887	GO:GO:0019538	GO:GO:0032197	GO:GO:0032508	GO:GO:0040029	GO:GO:0044030
GO:GO:0051574	GO:GO:0090241	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EntrezGene:LOC100263333	wikigene:LOC100263333	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0002109A22	ArrayExpress:VIT_04s0023g01610	EnsemblPlantsGene:VIT_04s0023g01610
EnsemblPlants:VIT_04s0023g01610.t01	RefSeq:XP_002267239	RefSeq:XP_002267239.2	RefSeq:XP_010649157.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:18137893..18145712

Molecular Weight (calculated)

86707.4 Da

IEP (calculated)

6.479

GRAVY (calculated)

-0.516

Length

759 amino acids

Sequence
(BLAST)

001: MVPGNEVKDD ASADSPTSVL EDEGICEEKI KVKMEDDILH PLDAKNGDSS LISGTMAKEE EMLMKERVKE EDAEQVVTQE APHLNDSQFT KLDELLTQTQ
101: LYSEFLLEKM DSITFNRVEE KESEIVEVKK RGRGSKRKAE YNNRKAKRAV AAMLTRSKEG ATPEDVNLTE EERAEKEQAG LVPLLTGGKL KSYQIKGVKW
201: LISLWQNGLN GILADQMGLG KTIQTIGFLA HLKGKGLDGP YLVIAPLSTL SNWANEIKRF VPSINAIIYH GNRKERDQIR MKYMPRTIGP KFPIILTSYE
301: VALNDARKYL RHYNWKYLVV DEGHRLKNSK CKLLKELKLL PVENKLLLTG TPLQNNLAEL WSLLNFILPD IFSSHEEFES WFDLSGKCNN EAVVEELEER
401: KRAQVVSKLH AILRPFLLRR MKSDVEQMLP RKKEIILYAT MTEHQKNFKD HLVNKTLENY LKEKASTGRG VKGKLNNLMV QLRKNCNHPD LLESAFDGSY
501: LYPPVEQIVE QCGKFRLLDR LLARLFARKH KVLIFSQWTK ILDIMEYYFS EKGLEVCRID GSVRLDERKR QIEEFNDMNS NCRVFLLSTR AGGLGINLTA
601: ADTCILYDSD WNPQMDLQAM DRCHRIGQTK PVHVYRLATA QSIEGRMLKR AFSKLKLEHV VIGKGQFQQE RIKPNMDVLE EEDLLQLLQD QEDSEDKLIQ
701: TDISEEDLDR ILDRSDLIGD TSNDDGRSNS AADAFPLKGP GWEVMTPTAS GGMLSTLNS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.