Factsheet for PGSC0003DMT400038561

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085390.2.1	Tomato	cytosol	96.45	90.38
PGSC0003DMT400040011	Potato	cytosol	82.89	83.55
VIT_04s0023g01610.t01	Wine grape	cytosol	76.84	76.94
KRH76800	Soybean	cytosol	71.71	71.52
KRH28662	Soybean	cytosol	71.18	70.9
AT5G66750.1	Thale cress	cytosol	70.26	69.9
Bra012099.1-P	Field mustard	cytosol	70.79	69.78
CDY53848	Canola	cytosol	70.79	69.78
CDY57125	Canola	cytosol	70.13	69.58
CDX81370	Canola	cytosol	70.0	69.45
CDY30755	Canola	cytosol	70.66	69.38
GSMUA_Achr3P26090_001	Banana	cytosol	67.37	67.46
TraesCS7A01G074600.1	Wheat	cytosol	63.68	64.45
EER97913	Sorghum	cytosol	65.92	64.4
TraesCS7D01G069700.1	Wheat	cytosol	65.66	64.06
Zm00001d007978_P003	Maize	cytosol	65.92	63.58
TraesCS2A01G368200.1	Wheat	cytosol	63.95	62.39
EER93549	Sorghum	cytosol	66.97	60.89
Os03t0722400-01	Rice	cytosol	67.89	60.78
TraesCS4D01G053600.2	Wheat	cytosol	66.71	60.72
TraesCS4A01G261000.1	Wheat	cytosol	66.71	60.5
Os09t0442700-01	Rice	cytosol	67.24	60.47
TraesCS2D01G365000.1	Wheat	cytosol	65.26	60.41
TraesCS2B01G385300.1	Wheat	cytosol	64.74	60.07
Zm00001d033827_P006	Maize	cytosol	66.45	59.55
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	66.18	57.68
TraesCS4B01G053600.1	Wheat	cytosol, plastid	66.58	55.85
Bra037150.1-P	Field mustard	nucleus	70.13	44.45
PGSC0003DMT400066819	Potato	cytosol	15.53	31.81
PGSC0003DMT400079102	Potato	nucleus	35.26	25.33
PGSC0003DMT400058376	Potato	nucleus	35.26	25.19
PGSC0003DMT400011842	Potato	nucleus	5.66	6.22
PGSC0003DMT400000170	Potato	nucleus	0.0	0.0

Protein Annotations

EntrezGene:102600977	MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	UniProt:M1B734	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400014895	PGSC:PGSC0003DMG400014895	EnsemblPlants:PGSC0003DMT400038561	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI0002961318	RefSeq:XP_006340599.1	RefSeq:XP_006340600.1	SEG:seg	:	:

Description

ISWI chromatin remodeling complex ATPase ISW1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014895]

Coordinates

chr2:+:40645112..40652973

Molecular Weight (calculated)

86940.5 Da

IEP (calculated)

5.764

GRAVY (calculated)

-0.472

Length

760 amino acids

Sequence
(BLAST)

001: MVADEGVKDR TVADSPVSVL EDEDTCKEDL AVKLEEEVSL DPENGDATHI PENMAKEEEI LIRARAKEEE EQLNNLKEAP ILNDTQFTKL DELLTQTQLY
101: SEFLLEKMDN ITTTNVKEDE EKSVKENKKG RGAKRKATTS YNNNKAKRAV AAMLTRSKED VPIEDATLTE EERFEKEQAE LVPLLTGGKL KSYQLKGVKW
201: LISLWQNGLN GILADQMGLG KTIQTIAFLA HLKGNGLDGP YLVIAPLSTL SNWLNEMERF VPSINAIIYH GDKKQRDEIR MKHMPRTTGP NFPIVITSYE
301: IAMSDARKFL RHYSWKYLVV DEGHRLKNSK CKLIKELKLL PIENKLLLTG TPLQNNLAEL WSLLNFILPD IFSSHDEFES WFDLSGKFSN ESEKEEMEER
401: RKAQVVAKLH AILRPFLLRR LKVDVEQMLP RKKEIILYAT LTDYQKKFQE HLINRTLEGY LIENVSTGNG FKGRLNNLMI QLRKNCNHPD LLESIFNGSN
501: FYPPVEQIVE QCGKFRLLDQ LLSKLFARKH KVLIFSQWTR VLDLMDYYFS ERGFDVCRID GSVKLDERKR QIKEFNDVSS KFRIFLLSTR AGGLGINLTA
601: ADTCILYDSD WNPQMDLQAM DRCHRIGQTK PVHVYRLSTA LSVEGRILKR AFSKLKLEHV VIGKGQFKQE MSKPSMDVTE EEDLLSLLRD RDSEEDKLVQ
701: TDVSDEDLQR ILDRSDLLIR PPSGEDGDAE SCVNVLPLKG PGWEVVIPTA TGGMLSTLNS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.