Factsheet for AT5G66750.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81370	Canola	cytosol	88.09	87.86
CDY57125	Canola	cytosol	87.3	87.08
CDY53848	Canola	cytosol	87.3	86.51
CDY30755	Canola	cytosol	87.43	86.3
Bra012099.1-P	Field mustard	cytosol	86.91	86.12
VIT_04s0023g01610.t01	Wine grape	cytosol	72.38	72.86
PGSC0003DMT400040011	Potato	cytosol	71.2	72.15
PGSC0003DMT400038561	Potato	cytosol	69.9	70.26
Solyc02g062780.2.1	Tomato	cytosol	70.16	69.52
KRH76800	Soybean	cytosol	69.11	69.29
KRH28662	Soybean	cytosol	68.59	68.68
GSMUA_Achr3P26090_001	Banana	cytosol	65.97	66.4
Solyc02g085390.2.1	Tomato	cytosol	70.42	66.34
TraesCS7A01G074600.1	Wheat	cytosol	61.26	62.32
TraesCS7D01G069700.1	Wheat	cytosol	62.83	61.62
EER97913	Sorghum	cytosol	62.7	61.57
Zm00001d007978_P003	Maize	cytosol	62.57	60.66
TraesCS2A01G368200.1	Wheat	cytosol	61.13	59.95
TraesCS4D01G053600.2	Wheat	cytosol	64.92	59.4
TraesCS4A01G261000.1	Wheat	cytosol	64.66	58.95
EER93549	Sorghum	cytosol	63.87	58.37
Os09t0442700-01	Rice	cytosol	64.4	58.22
Os03t0722400-01	Rice	cytosol	64.53	58.07
TraesCS2D01G365000.1	Wheat	cytosol	61.78	57.49
TraesCS2B01G385300.1	Wheat	cytosol	61.52	57.39
Zm00001d033827_P006	Maize	cytosol	63.22	56.96
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	63.22	55.39
Bra037150.1-P	Field mustard	nucleus	86.52	55.13
TraesCS4B01G053600.1	Wheat	cytosol, plastid	64.79	54.64
AT2G02090.1	Thale cress	cytosol, plastid	25.52	25.56
AT3G06400.3	Thale cress	nucleus	35.21	25.45
AT5G18620.2	Thale cress	nucleus	34.95	24.91
AT2G44980.2	Thale cress	cytosol	27.36	23.83
AT5G19310.1	Thale cress	nucleus	32.98	23.68
AT3G06010.1	Thale cress	nucleus	33.12	22.96
AT4G31900.1	Thale cress	nucleus	27.49	17.47
AT2G25170.3	Thale cress	endoplasmic reticulum	29.32	15.89
AT3G57300.2	Thale cress	cytosol	29.97	14.87
AT2G13370.2	Thale cress	nucleus	31.15	13.81
AT3G12810.1	Thale cress	nucleus	30.5	11.34
AT2G46020.3	Thale cress	plastid	30.24	10.53
AT5G44800.1	Thale cress	nucleus	28.8	9.9
AT2G28290.5	Thale cress	nucleus	33.25	7.1

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:836808	ProteinID:AAD28303.1	ProteinID:AAX22754.1
ProteinID:AAX22755.1	ProteinID:AED98259.1	ArrayExpress:AT5G66750	EnsemblPlantsGene:AT5G66750	RefSeq:AT5G66750	TAIR:AT5G66750
RefSeq:AT5G66750-TAIR-G	EnsemblPlants:AT5G66750.1	TAIR:AT5G66750.1	EMBL:AY099638	Unigene:At.28851	ProteinID:BAA97281.1
EMBL:BT002161	ncoils:Coil	Symbol:DDM1	GO:GO:0000166	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0004386	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006344	GO:GO:0006346	GO:GO:0006349	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009294
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538	GO:GO:0032197
GO:GO:0032508	GO:GO:0040029	GO:GO:0044030	GO:GO:0051574	GO:GO:0090241	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	RefSeq:NP_201476.1	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293
PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009052	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812
UniProt:Q9XFH4	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI00000AC709	SEG:seg	:	:	:	:

Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]

Coordinates

chr5:+:26648897..26653191

Molecular Weight (calculated)

86642.7 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.502

Length

764 amino acids

Sequence
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.