Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14410 | Canola | nucleus | 44.81 | 64.0 |
| CDY07678 | Canola | nucleus | 45.23 | 58.84 |
| GSMUA_Achr6P02430_001 | Banana | cytosol | 14.46 | 57.25 |
| KRH02187 | Soybean | nucleus | 21.71 | 56.11 |
| Bra000114.1-P | Field mustard | nucleus | 49.4 | 53.92 |
| Solyc11g062010.1.1 | Tomato | nucleus | 29.45 | 39.48 |
| HORVU7Hr1G041450.33 | Barley | nucleus | 26.04 | 37.21 |
| AT5G66750.1 | Thale cress | cytosol | 7.1 | 33.25 |
| KRH50934 | Soybean | nucleus | 34.52 | 32.57 |
| AT3G06010.1 | Thale cress | nucleus | 10.01 | 32.49 |
| AT5G19310.1 | Thale cress | nucleus | 9.34 | 31.39 |
| TraesCS7D01G206700.2 | Wheat | nucleus | 27.89 | 29.61 |
| TraesCS7B01G110600.1 | Wheat | nucleus | 27.94 | 29.54 |
| TraesCS7A01G203600.1 | Wheat | nucleus | 27.92 | 29.44 |
| AT3G06400.3 | Thale cress | nucleus | 8.45 | 28.57 |
| AT5G18620.2 | Thale cress | nucleus | 8.36 | 27.89 |
| Zm00001d037346_P007 | Maize | nucleus | 28.64 | 26.87 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 5.71 | 26.74 |
| OQU76185 | Sorghum | nucleus | 30.01 | 26.51 |
| AT2G44980.2 | Thale cress | cytosol | 6.13 | 24.97 |
| VIT_05s0020g02020.t01 | Wine grape | nucleus | 16.31 | 21.8 |
| AT4G31900.1 | Thale cress | nucleus | 7.22 | 21.46 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 7.69 | 19.5 |
| AT2G13370.2 | Thale cress | nucleus | 8.98 | 18.62 |
| AT2G46020.3 | Thale cress | plastid | 10.71 | 17.46 |
| AT3G57300.2 | Thale cress | cytosol | 7.1 | 16.49 |
| AT5G44800.1 | Thale cress | nucleus | 9.26 | 14.89 |
| AT3G12810.1 | Thale cress | nucleus | 8.45 | 14.7 |
Protein Annotations
| MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:817375 | UniProt:A0A178VTI3 | UniProt:A0A1P8B2X1 |
| ProteinID:ANM63246.1 | ArrayExpress:AT2G28290 | EnsemblPlantsGene:AT2G28290 | RefSeq:AT2G28290 | TAIR:AT2G28290 | RefSeq:AT2G28290-TAIR-G |
| EnsemblPlants:AT2G28290.5 | Unigene:At.22414 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0042393 | InterPro:Gln-Leu-Gln_QLQ | InterPro:HSA_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014012 | InterPro:IPR014978 | InterPro:IPR038718 |
| RefSeq:NP_001325348.1 | ProteinID:OAP09750.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF14619 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51204 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF926 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00951 | SMART:SM01314 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| Symbol:SYD | InterPro:SnAC | UniParc:UPI0007DEA595 | SEG:seg | : | : |
Description
SYDP-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B2X1]
Coordinates
chr2:+:12056771..12073083
Molecular Weight (calculated)
389957.0 Da
IEP (calculated)
4.490
GRAVY (calculated)
-0.661
Length
3575 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSSSHNIEL EAAKFLHKLI QDSKDEPAKL ATKLYVILQH MKTSGKENTM PYQVISRAMD TVVNQHGLDI EALKSSCLPH PGGTQTEDSG SAHLAGSSQA
0101: VGVSNEGKAT LVENEMTKYD AFTSGRQLGG SNSASQTFYQ GSGTQSNRSF DRESPSNLDS TSGISQPHNR SETMNQRDVK SSGKRKRGES SLSWDQNMDN
0201: SQIFDSHKID DQTGEVSKIE MPGNSGDIRN LHVGLSSDAF TTPQCGWQSS EATAIRPAIH KEPGNNVAGE GFLPSGSPFR EQQLKQLRAQ CLVFLALRNG
0301: LVPKKLHVEI ALRNTFREED GFRGELFDPK GRTHTSSDLG GIPDVSALLS RTDNPTGRLD EMDFSSKETE RSRLGEKSFA NTVFSDGQKL LASRIPSSQA
0401: QTQVAVSHSQ LTFSPGLTKN TPSEMVGWTG VIKTNDLSTS AVQLDEFHSS ADEEEGNLQP SPKYTMSQKW IMGRQNKRLL VDRSWSLKQQ KADQAIGSRF
0501: NELKESVSLS DDISAKTKSV IELKKLQLLN LQRRLRSEFV YNFFKPIATD VEHLKSYKKH KHGRRIKQLE KYEQKMKEER QRRIRERQKE FFGGLEVHKE
0601: KLEDLFKVRR ERLKGFNRYA KEFHKRKERL HREKIDKIQR EKINLLKIND VEGYLRMVQD AKSDRVKQLL KETEKYLQKL GSKLKEAKLL TSRFENEADE
0701: TRTSNATDDE TLIENEDESD QAKHYLESNE KYYLMAHSIK ENINEQPSSL VGGKLREYQM NGLRWLVSLY NNHLNGILAD EMGLGKTVQV ISLICYLMET
0801: KNDRGPFLVV VPSSVLPGWQ SEINFWAPSI HKIVYCGTPD ERRKLFKEQI VHQKFNVLLT TYEYLMNKHD RPKLSKIHWH YIIIDEGHRI KNASCKLNAD
0901: LKHYVSSHRL LLTGTPLQNN LEELWALLNF LLPNIFNSSE DFSQWFNKPF QSNGESSAEE ALLSEEENLL IINRLHQVLR PFVLRRLKHK VENELPEKIE
1001: RLIRCEASAY QKLLMKRVED NLGSIGNAKS RAVHNSVMEL RNICNHPYLS QLHSEEVNNI IPKHFLPPIV RLCGKLEMLD RMLPKLKATD HRVLFFSTMT
1101: RLLDVMEDYL TLKGYKYLRL DGQTSGGDRG ALIDGFNKSG SPFFIFLLSI RAGGVGVNLQ AADTVILFDT DWNPQVDLQA QARAHRIGQK KDVLVLRFET
1201: VNSVEEQVRA SAEHKLGVAN QSITAGFFDN NTSAEDRKEY LESLLRESKK EEDAPVLDDD ALNDLIARRE SEIDIFESID KQRKENEMET WNTLVHGPGS
1301: DSFAHIPSIP SRLVTEDDLK LLYETMKLND VPMVAKESTV GMKRKDGSMG GLDTHQYGRG KRAREVRSYE EKLTEEEFEK LCQTESPDSP QGKGEGSERS
1401: LANDTSNIPV ENSSDTLLPT SPTQAITVQP MEPVRPQSHT LKEETQPIKR GRGRPKRTDK ALTPVSLSAV SRTQATGNAI SSAATGLDFV SSDKRLEAAS
1501: HPTSSLALTS PDLSGPPGFQ SLPASPAPTP IRGRGRGRSR GRGAGRGRRV EGVLHGSNSS ITQRTETATS LASDAEATKF ALPRSASEIV SRVPKANEGS
1601: TSNPDQVSPV HSATTALRSD KAADKDLDAP PGFDSGSHVQ TLNVLENSSE RKAFAVKKRP LIQGVSSQHP GPNKQPLDLP VSTSSTLLGG GPVQNQNAVS
1701: SVCDGSKSPS EGRTYTALQG VTTAPSDATL PMSSQPSDAT LPMSSQPVGS TVEAQEANVP SLPAALPAKR RVRNLPSRGE TPKRQGKRRG QPLPATDASS
1801: ARSTGLTPQI EVKVGNLSGT KAKFDAVAKE QPHFSQSVAP DIHSSGSLSQ EIRRDTSGTG GSARKQTADV TDVARVMKEI FSETSLLKHK VGEPSATTRT
1901: NVPDAQSPGE MNLHTVETHK AEDSSGLKNQ EALYNLSKAD KLVSDIPHPV PGDLTTSGSV ANKDVDIGSS KVAAENELVK IPGGDVDSSV IQLSLGNTLT
2001: AKSSLEKCTA DQLLGEKLSQ EGETTPASDG ETCHLAEETA SSLSYVRSEP TASASTTAEP LPTDKLEKNI SFQDEVKTLN GDKREAILLS SEEQTNVNSK
2101: IETNSEELQA SRTDEVPHVD GKSVDVANQT VKEDEAKHSV EIQSSMLEPD ELPNAGQKGH SSIDLQPLVL VTSNENAMSL DDKDYDPISK SADIEQDPEE
2201: SVFVQGVGRP KVGTADTQME DTNDAKLLVG CSVESEEKEK TLQSLIPGDD ADTEQDPEES VSDQRPKVGS AYTQMEDTDE AKLLMGCSVE SEEKEKTLQS
2301: HIPGDDADTE KNPEESVSVQ GVDRPKVGTT DTQMEDTNDA KLLVGCSVAS EEKEKTLQSH IPGDDADTEQ NPEESVSVQG VNRPKVGNAN TQMEDTDEAK
2401: VLVGCSVESE EKEKTLQSHI PGDDADTEQN PEESVSNFDR PKDGTADTHM EDIDDAKLLV GCSVESEEKE KSLQSHMPSD DAVLHAPFEN TKDSKGDDLH
2501: GESLVSCPTM EVMEQKGFES ETHARTDSGG IDRGNEVSEN MSDGVKMNIS SVQVPDASHD LNVSQDQTDI PLVGGIDPEH VQENVDVPAS PHGAAPNIVI
2601: FQSEGHLSPS ILPDDVAGQL ESMSNDEKTN ISSEQVPDVS HDLKVSQDQT DIPPVGGIVP ENLQEIVDVP ASPHGVVPDV VVSQSEEIQS PSILPDDVPG
2701: QPDDGNCEKM DTMQNNTSID IGITSGKTCQ PSSSTQPEDE NRNSLSHCEP SEVVEQRDSR DQVCIGSVES QVEISSAILE NRSADIQPPQ SILVDQKDIE
2801: ESKEPGIESA DVSLHQLADI QAEPSNLVDQ MDIEESKEPG TESADVSLHQ LADIQPGPSI LVDQMDTEKS KEPGTESADV SLHQLADIQP GPSILVDQMD
2901: TEKSKEPGTE SADVSLHQLA DIQPGPSILV DQMDTEEFKN PDVSLHQLAD IEPSLSISAV QKNIEDKDQS HVETAGSELV DVSAECSTEP QVQLPPSSEP
3001: VGDMHVHLGA SKSEIVAEGT DFSSSLPKTE EENAKSQLAD TEPSSSLTAV QKNIEDQVET AGCEFVVVST GCSTEPQVQL PPSAEPVVAE GTEFPSSLLM
3101: TGVDNSSHLM TGVDNAKTHL ADVVPSSSPT TMEKNIEAQD QDQVTTGGCG LVDVLTECSS EPQLQLPPSA EPVISEGTEL ATLPLTEEEN ADSQLANIEP
3201: SSSPSVVEKN IEAQDQDQVK TAGCELVSTG CSSEPQVHLP PSAEPDGDIH VHLKETEKSE SMVVVGEGTA FPSSLPVTEE GNAESQLADT EPFTSPTVVE
3301: KNIKDQEQVE TTGCGLVDDS TGCSSEPQVQ LPPSAEPMEG THMHLEETKK SETVVTEIQL ADIDPSFSLI VVQTNIEDQD QIETGGCDLI NVPSGCSTEP
3401: QIQLSSSAEP EEGMHIHLEA AMNSETVVTE GSELPSSLPM TEDENADGQL AEVEPSVSLT VEQTNIEEKD HIETAECELV DVSPGCSSQP EVKFPPSPDA
3501: VGGMDVHLET VVTEDTDSNS SLPKTEEKDA ENPSDRLDGE SDGTTVATVE GTCVESNSLV AEESNIEVPK DNEDV
0101: VGVSNEGKAT LVENEMTKYD AFTSGRQLGG SNSASQTFYQ GSGTQSNRSF DRESPSNLDS TSGISQPHNR SETMNQRDVK SSGKRKRGES SLSWDQNMDN
0201: SQIFDSHKID DQTGEVSKIE MPGNSGDIRN LHVGLSSDAF TTPQCGWQSS EATAIRPAIH KEPGNNVAGE GFLPSGSPFR EQQLKQLRAQ CLVFLALRNG
0301: LVPKKLHVEI ALRNTFREED GFRGELFDPK GRTHTSSDLG GIPDVSALLS RTDNPTGRLD EMDFSSKETE RSRLGEKSFA NTVFSDGQKL LASRIPSSQA
0401: QTQVAVSHSQ LTFSPGLTKN TPSEMVGWTG VIKTNDLSTS AVQLDEFHSS ADEEEGNLQP SPKYTMSQKW IMGRQNKRLL VDRSWSLKQQ KADQAIGSRF
0501: NELKESVSLS DDISAKTKSV IELKKLQLLN LQRRLRSEFV YNFFKPIATD VEHLKSYKKH KHGRRIKQLE KYEQKMKEER QRRIRERQKE FFGGLEVHKE
0601: KLEDLFKVRR ERLKGFNRYA KEFHKRKERL HREKIDKIQR EKINLLKIND VEGYLRMVQD AKSDRVKQLL KETEKYLQKL GSKLKEAKLL TSRFENEADE
0701: TRTSNATDDE TLIENEDESD QAKHYLESNE KYYLMAHSIK ENINEQPSSL VGGKLREYQM NGLRWLVSLY NNHLNGILAD EMGLGKTVQV ISLICYLMET
0801: KNDRGPFLVV VPSSVLPGWQ SEINFWAPSI HKIVYCGTPD ERRKLFKEQI VHQKFNVLLT TYEYLMNKHD RPKLSKIHWH YIIIDEGHRI KNASCKLNAD
0901: LKHYVSSHRL LLTGTPLQNN LEELWALLNF LLPNIFNSSE DFSQWFNKPF QSNGESSAEE ALLSEEENLL IINRLHQVLR PFVLRRLKHK VENELPEKIE
1001: RLIRCEASAY QKLLMKRVED NLGSIGNAKS RAVHNSVMEL RNICNHPYLS QLHSEEVNNI IPKHFLPPIV RLCGKLEMLD RMLPKLKATD HRVLFFSTMT
1101: RLLDVMEDYL TLKGYKYLRL DGQTSGGDRG ALIDGFNKSG SPFFIFLLSI RAGGVGVNLQ AADTVILFDT DWNPQVDLQA QARAHRIGQK KDVLVLRFET
1201: VNSVEEQVRA SAEHKLGVAN QSITAGFFDN NTSAEDRKEY LESLLRESKK EEDAPVLDDD ALNDLIARRE SEIDIFESID KQRKENEMET WNTLVHGPGS
1301: DSFAHIPSIP SRLVTEDDLK LLYETMKLND VPMVAKESTV GMKRKDGSMG GLDTHQYGRG KRAREVRSYE EKLTEEEFEK LCQTESPDSP QGKGEGSERS
1401: LANDTSNIPV ENSSDTLLPT SPTQAITVQP MEPVRPQSHT LKEETQPIKR GRGRPKRTDK ALTPVSLSAV SRTQATGNAI SSAATGLDFV SSDKRLEAAS
1501: HPTSSLALTS PDLSGPPGFQ SLPASPAPTP IRGRGRGRSR GRGAGRGRRV EGVLHGSNSS ITQRTETATS LASDAEATKF ALPRSASEIV SRVPKANEGS
1601: TSNPDQVSPV HSATTALRSD KAADKDLDAP PGFDSGSHVQ TLNVLENSSE RKAFAVKKRP LIQGVSSQHP GPNKQPLDLP VSTSSTLLGG GPVQNQNAVS
1701: SVCDGSKSPS EGRTYTALQG VTTAPSDATL PMSSQPSDAT LPMSSQPVGS TVEAQEANVP SLPAALPAKR RVRNLPSRGE TPKRQGKRRG QPLPATDASS
1801: ARSTGLTPQI EVKVGNLSGT KAKFDAVAKE QPHFSQSVAP DIHSSGSLSQ EIRRDTSGTG GSARKQTADV TDVARVMKEI FSETSLLKHK VGEPSATTRT
1901: NVPDAQSPGE MNLHTVETHK AEDSSGLKNQ EALYNLSKAD KLVSDIPHPV PGDLTTSGSV ANKDVDIGSS KVAAENELVK IPGGDVDSSV IQLSLGNTLT
2001: AKSSLEKCTA DQLLGEKLSQ EGETTPASDG ETCHLAEETA SSLSYVRSEP TASASTTAEP LPTDKLEKNI SFQDEVKTLN GDKREAILLS SEEQTNVNSK
2101: IETNSEELQA SRTDEVPHVD GKSVDVANQT VKEDEAKHSV EIQSSMLEPD ELPNAGQKGH SSIDLQPLVL VTSNENAMSL DDKDYDPISK SADIEQDPEE
2201: SVFVQGVGRP KVGTADTQME DTNDAKLLVG CSVESEEKEK TLQSLIPGDD ADTEQDPEES VSDQRPKVGS AYTQMEDTDE AKLLMGCSVE SEEKEKTLQS
2301: HIPGDDADTE KNPEESVSVQ GVDRPKVGTT DTQMEDTNDA KLLVGCSVAS EEKEKTLQSH IPGDDADTEQ NPEESVSVQG VNRPKVGNAN TQMEDTDEAK
2401: VLVGCSVESE EKEKTLQSHI PGDDADTEQN PEESVSNFDR PKDGTADTHM EDIDDAKLLV GCSVESEEKE KSLQSHMPSD DAVLHAPFEN TKDSKGDDLH
2501: GESLVSCPTM EVMEQKGFES ETHARTDSGG IDRGNEVSEN MSDGVKMNIS SVQVPDASHD LNVSQDQTDI PLVGGIDPEH VQENVDVPAS PHGAAPNIVI
2601: FQSEGHLSPS ILPDDVAGQL ESMSNDEKTN ISSEQVPDVS HDLKVSQDQT DIPPVGGIVP ENLQEIVDVP ASPHGVVPDV VVSQSEEIQS PSILPDDVPG
2701: QPDDGNCEKM DTMQNNTSID IGITSGKTCQ PSSSTQPEDE NRNSLSHCEP SEVVEQRDSR DQVCIGSVES QVEISSAILE NRSADIQPPQ SILVDQKDIE
2801: ESKEPGIESA DVSLHQLADI QAEPSNLVDQ MDIEESKEPG TESADVSLHQ LADIQPGPSI LVDQMDTEKS KEPGTESADV SLHQLADIQP GPSILVDQMD
2901: TEKSKEPGTE SADVSLHQLA DIQPGPSILV DQMDTEEFKN PDVSLHQLAD IEPSLSISAV QKNIEDKDQS HVETAGSELV DVSAECSTEP QVQLPPSSEP
3001: VGDMHVHLGA SKSEIVAEGT DFSSSLPKTE EENAKSQLAD TEPSSSLTAV QKNIEDQVET AGCEFVVVST GCSTEPQVQL PPSAEPVVAE GTEFPSSLLM
3101: TGVDNSSHLM TGVDNAKTHL ADVVPSSSPT TMEKNIEAQD QDQVTTGGCG LVDVLTECSS EPQLQLPPSA EPVISEGTEL ATLPLTEEEN ADSQLANIEP
3201: SSSPSVVEKN IEAQDQDQVK TAGCELVSTG CSSEPQVHLP PSAEPDGDIH VHLKETEKSE SMVVVGEGTA FPSSLPVTEE GNAESQLADT EPFTSPTVVE
3301: KNIKDQEQVE TTGCGLVDDS TGCSSEPQVQ LPPSAEPMEG THMHLEETKK SETVVTEIQL ADIDPSFSLI VVQTNIEDQD QIETGGCDLI NVPSGCSTEP
3401: QIQLSSSAEP EEGMHIHLEA AMNSETVVTE GSELPSSLPM TEDENADGQL AEVEPSVSLT VEQTNIEEKD HIETAECELV DVSPGCSSQP EVKFPPSPDA
3501: VGGMDVHLET VVTEDTDSNS SLPKTEEKDA ENPSDRLDGE SDGTTVATVE GTCVESNSLV AEESNIEVPK DNEDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.