Factsheet for AT2G13370.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37209	Canola	nucleus	87.36	89.32
CDX81444	Canola	nucleus	87.7	89.31
Bra037208.1-P	Field mustard	nucleus	87.3	89.26
HORVU2Hr1G022450.1	Barley	nucleus	25.93	77.87
VIT_06s0009g03750.t01	Wine grape	nucleus	71.52	69.94
KRH14560	Soybean	nucleus	70.24	68.65
KRH73568	Soybean	nucleus	38.63	68.38
Solyc12g099910.1.1	Tomato	nucleus	66.59	67.25
Os07t0660200-01	Rice	nucleus	23.26	63.55
GSMUA_Achr8P29610_001	Banana	nucleus	59.86	61.43
Zm00001d022405_P051	Maize	nucleus	57.08	57.08
KXG36860	Sorghum	nucleus	56.9	56.8
TraesCS2A01G128400.1	Wheat	nucleus	56.9	56.77
TraesCS2B01G150500.1	Wheat	nucleus	56.79	56.66
TraesCS2D01G130900.1	Wheat	nucleus	56.79	56.66
Zm00001d007089_P003	Maize	nucleus	52.32	51.93
AT5G18620.2	Thale cress	nucleus	19.84	31.9
AT3G06400.3	Thale cress	nucleus	19.55	31.88
AT5G66750.1	Thale cress	cytosol	13.81	31.15
AT2G44980.2	Thale cress	cytosol	13.92	27.37
AT3G06010.1	Thale cress	nucleus	17.34	27.13
AT5G19310.1	Thale cress	nucleus	16.3	26.41
AT2G02090.1	Thale cress	cytosol, plastid	11.6	26.21
AT4G31900.1	Thale cress	nucleus	18.21	26.12
AT2G25170.3	Thale cress	endoplasmic reticulum	19.95	24.4
AT3G57300.2	Thale cress	cytosol	14.44	16.17
AT5G44800.1	Thale cress	nucleus	20.13	15.61
AT3G12810.1	Thale cress	nucleus	17.17	14.4
AT2G46020.3	Thale cress	plastid	17.34	13.63
AT2G28290.5	Thale cress	nucleus	18.62	8.98

Protein Annotations

Gene3D:1.10.10.60	MapMan:12.4.1.1.2	MapMan:15.3.4.5	Gene3D:2.40.50.40	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
EntrezGene:815823	ProteinID:AAD28668.1	ProteinID:AEC06230.1	ProteinID:ANM62965.1	ProteinID:ANM62966.1	ArrayExpress:AT2G13370
EnsemblPlantsGene:AT2G13370	RefSeq:AT2G13370	TAIR:AT2G13370	RefSeq:AT2G13370-TAIR-G	EnsemblPlants:AT2G13370.2	Unigene:At.40665
Symbol:CHR5	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	ncoils:Coil	InterPro:DUF4208
UniProt:F4IV99	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	RefSeq:NP_001325086.1	RefSeq:NP_001325087.1
RefSeq:NP_178970.3	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF00385	PFAM:PF13907
PFscan:PS50013	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF952	SMART:SM00298
SMART:SM00487	SMART:SM00490	SMART:SM01176	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
SUPFAM:SSF54160	UniParc:UPI000150587F	SEG:seg	:	:	:

Description

CHR5Protein CHROMATIN REMODELING 5 [Source:UniProtKB/Swiss-Prot;Acc:F4IV99]

Coordinates

chr2:-:5544054..5556560

Molecular Weight (calculated)

197281.0 Da

IEP (calculated)

5.425

GRAVY (calculated)

-0.846

Length

1724 amino acids

Sequence
(BLAST)

0001: MAFFRNYSND TVSHNVLDEN EERQNAATFQ SSPLNEDVDG TYSERGFDMN MDVQYQSDPE PGCSIRQPNE TAVDNVADPV DSHYQSSTKR LGVTGRWGST
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.