Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G022450.1 | Barley | nucleus | 27.38 | 80.14 |
| Os07t0660200-01 | Rice | nucleus | 26.55 | 70.68 |
| KXG36860 | Sorghum | nucleus | 66.43 | 64.62 |
| Zm00001d022405_P051 | Maize | nucleus | 66.19 | 64.5 |
| TraesCS2D01G130900.1 | Wheat | nucleus | 65.12 | 63.31 |
| TraesCS2B01G150500.1 | Wheat | nucleus | 65.06 | 63.25 |
| TraesCS2A01G128400.1 | Wheat | nucleus | 64.94 | 63.14 |
| VIT_06s0009g03750.t01 | Wine grape | nucleus | 64.17 | 61.15 |
| Solyc12g099910.1.1 | Tomato | nucleus | 61.9 | 60.93 |
| KRH14560 | Soybean | nucleus | 63.21 | 60.2 |
| Bra037208.1-P | Field mustard | nucleus | 60.18 | 59.96 |
| CDY37209 | Canola | nucleus | 60.18 | 59.96 |
| AT2G13370.2 | Thale cress | nucleus | 61.43 | 59.86 |
| CDX81444 | Canola | nucleus | 60.0 | 59.54 |
| Zm00001d007089_P003 | Maize | nucleus | 61.19 | 59.18 |
| KRH73568 | Soybean | nucleus | 33.93 | 58.52 |
| GSMUA_AchrUn_... | Banana | cytosol | 9.88 | 34.23 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 20.36 | 31.99 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 20.54 | 31.91 |
| GSMUA_Achr3P26090_001 | Banana | cytosol | 14.29 | 31.62 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 11.61 | 24.16 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 19.52 | 23.79 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 17.2 | 19.71 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 15.18 | 18.48 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 15.54 | 17.85 |
| GSMUA_Achr6P02430_001 | Banana | cytosol | 9.35 | 17.39 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 3.04 | 15.36 |
| GSMUA_Achr9P11210_001 | Banana | nucleus | 18.04 | 14.72 |
| GSMUA_Achr6P29570_001 | Banana | nucleus | 17.92 | 14.05 |
| GSMUA_Achr1P24350_001 | Banana | nucleus | 17.08 | 13.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.9 | 13.23 |
| GSMUA_AchrUn_... | Banana | nucleus, plastid | 17.2 | 12.97 |
| GSMUA_Achr3P26510_001 | Banana | nucleus | 10.89 | 11.25 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:12.4.1.1.2 | MapMan:15.3.4.5 | Gene3D:2.40.50.40 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 |
| InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF4208 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0009506 | EnsemblPlantsGene:GSMUA_Achr8G29610_001 | EnsemblPlants:GSMUA_Achr8P29610_001 | EnsemblPlants:GSMUA_Achr8T29610_001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M0TUR3 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | PFAM:PF13907 | PFscan:PS50013 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF952 | SMART:SM00298 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM01176 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 |
| UniParc:UPI0002968178 | SEG:seg | : | : | : | : |
Description
SNF2 family N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G29610_001]
Coordinates
chr8:-:31929896..31959414
Molecular Weight (calculated)
192468.0 Da
IEP (calculated)
6.245
GRAVY (calculated)
-0.818
Length
1680 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAFFRNYNSK INSGHNLDEK VEEDRPAEDY NSVGNRNVDV NVNYNDADMT GDANQNEEEQ FNTGRLQIDN SEGDASGKLG KRAAPTGAWG SKFWKVCQPM
0101: SDSGDAEYDH NDLGEDAGDN YSEDSNGQKD RRQSQREHVE VPAEEMLSDD YYEQDGEEQS DSLHGSGPSH LNVAEDDPDD ADFEPESSDT GKGRKSKEKA
0201: SDSDDFEDDN EDDIDLSEED DNDYFDNRRR RMPRKVGQSL KQKDTKPSVN IRRKRGRTFS DEEYHSSGND LEEDSEEDLS RKARSSSQSR KRGGGNSTMT
0301: ANTNLISSEL RTSGRLVKKV SYAESEESED IDEEKSNKFQ KEDAEEDDGD SIEKVLWHQP KGTAEDAMRD NRSTQPVVFS SISDSEPVWD DVEFYVKWKG
0401: QSYLHCEWKS FADLQNLSGF KKVLNYIKRA TEERRHKKAL SREEIEVHDV SKEMELDLLK QYSQVERIFA DRISKIGGDD VVPEYLVKWQ GLSYAEATWE
0501: KDTDIAFAQD AIDEYKVREA ATTVQGKTVD FQRKNSKASL RRLDEQPEWL KGGKLRDYQL EGLNFLVNSW RNDTNVILAD EMGLGKTVQS VSMLGFLQNA
0601: QQIQGPFLVV VPLSTLSNWA REFKKWLPEM NIVVYVGNRA SREVNHLNTG KIMAMTIIHF EKNKKLKSGR NIKFDTLLTT YEVILKDKVV LSKIRWNYLM
0701: VDEAHRLKNS EASLYTTLLE FNTKNKLLIT GTPLQNSVEE LWSLLHFLDP EKFINKDDFV EKYKNLSSFN EIQLANLHKE LRPHILRRII KDVEKSLPPK
0801: IERILRVEMS PLQKQYYKWI LERNFHNLNK GVRGNQVSLL NIVVELKKCC NHPFLFESAD HGYGGDNGTS DINKVERIVM SSGKLVILDK LLIRLRETNH
0901: RVLIFSQMVR MLDILAEYLS FRGFQFQRLD GSTRADLRHQ AMEHFNAPGS DDFCFLLSTR AGGLGINLAT ADTVIIFDSD WNPQNDLQAM SRAHRIGQQE
1001: VVNIYRFVTS RSVEEDILER AKKKMVLDHL VIQKLNAEGR LEKKETKKGS SMFDKRELSA ILRFGAEELF KEEKDDEDNK RLETMDIDEI LERAEKVANF
1101: CSAEDDATFW SRLIQPEAQD QVDAALAPRA ARNIKSYAEH EQPEKSTKSK KSVVDSREKT QKRSSKAADA LVHSLPIIEG AAAQVREWSF GGLPKKDASH
1201: FVRAVKRFGN PRQIDLIVAE VGGVVEAALP EAQIELFDLL IDGCREAVSG GNIDAKGTLL DFFGVSVKAH EFLNRVEELQ LLAKRIGRYK DPVSQFRLVT
1301: QHKSPQWSKS CGWNSVDDAR LLLGIYYHGY GNWEKIRLDP SLGLTKKIAP ITLGERETFL PRAPNLDNRA SALLQKEFAS INGKSKVKGS RKVVNEGENV
1401: SKLSGSRVRD VNMKAGLSKL NSREKDRFQK LKVEPQVKEE GEISDSEQER YQKLKEEKWM EWCADVMEEE EQTLKRLQRL QTTSIDLPKE KVLLRIRRYL
1501: QLIGRKIDNI VQQHEVSYKQ SRMTMRLWNY VSTFSNLTGE RLHEIYSKLK DEQNDAGVGP SYINSYGTLN SNQFPTLNND LQRRQRPYQH SSQPSEAFHR
1601: NQSTGKSEAW KRRKRSEMDN QLLIHSHCQP DMMSNGVRLN EQTNSAGILG KGPVEMRRYP NDRPNRAHPG RFPPGQGHMS
0101: SDSGDAEYDH NDLGEDAGDN YSEDSNGQKD RRQSQREHVE VPAEEMLSDD YYEQDGEEQS DSLHGSGPSH LNVAEDDPDD ADFEPESSDT GKGRKSKEKA
0201: SDSDDFEDDN EDDIDLSEED DNDYFDNRRR RMPRKVGQSL KQKDTKPSVN IRRKRGRTFS DEEYHSSGND LEEDSEEDLS RKARSSSQSR KRGGGNSTMT
0301: ANTNLISSEL RTSGRLVKKV SYAESEESED IDEEKSNKFQ KEDAEEDDGD SIEKVLWHQP KGTAEDAMRD NRSTQPVVFS SISDSEPVWD DVEFYVKWKG
0401: QSYLHCEWKS FADLQNLSGF KKVLNYIKRA TEERRHKKAL SREEIEVHDV SKEMELDLLK QYSQVERIFA DRISKIGGDD VVPEYLVKWQ GLSYAEATWE
0501: KDTDIAFAQD AIDEYKVREA ATTVQGKTVD FQRKNSKASL RRLDEQPEWL KGGKLRDYQL EGLNFLVNSW RNDTNVILAD EMGLGKTVQS VSMLGFLQNA
0601: QQIQGPFLVV VPLSTLSNWA REFKKWLPEM NIVVYVGNRA SREVNHLNTG KIMAMTIIHF EKNKKLKSGR NIKFDTLLTT YEVILKDKVV LSKIRWNYLM
0701: VDEAHRLKNS EASLYTTLLE FNTKNKLLIT GTPLQNSVEE LWSLLHFLDP EKFINKDDFV EKYKNLSSFN EIQLANLHKE LRPHILRRII KDVEKSLPPK
0801: IERILRVEMS PLQKQYYKWI LERNFHNLNK GVRGNQVSLL NIVVELKKCC NHPFLFESAD HGYGGDNGTS DINKVERIVM SSGKLVILDK LLIRLRETNH
0901: RVLIFSQMVR MLDILAEYLS FRGFQFQRLD GSTRADLRHQ AMEHFNAPGS DDFCFLLSTR AGGLGINLAT ADTVIIFDSD WNPQNDLQAM SRAHRIGQQE
1001: VVNIYRFVTS RSVEEDILER AKKKMVLDHL VIQKLNAEGR LEKKETKKGS SMFDKRELSA ILRFGAEELF KEEKDDEDNK RLETMDIDEI LERAEKVANF
1101: CSAEDDATFW SRLIQPEAQD QVDAALAPRA ARNIKSYAEH EQPEKSTKSK KSVVDSREKT QKRSSKAADA LVHSLPIIEG AAAQVREWSF GGLPKKDASH
1201: FVRAVKRFGN PRQIDLIVAE VGGVVEAALP EAQIELFDLL IDGCREAVSG GNIDAKGTLL DFFGVSVKAH EFLNRVEELQ LLAKRIGRYK DPVSQFRLVT
1301: QHKSPQWSKS CGWNSVDDAR LLLGIYYHGY GNWEKIRLDP SLGLTKKIAP ITLGERETFL PRAPNLDNRA SALLQKEFAS INGKSKVKGS RKVVNEGENV
1401: SKLSGSRVRD VNMKAGLSKL NSREKDRFQK LKVEPQVKEE GEISDSEQER YQKLKEEKWM EWCADVMEEE EQTLKRLQRL QTTSIDLPKE KVLLRIRRYL
1501: QLIGRKIDNI VQQHEVSYKQ SRMTMRLWNY VSTFSNLTGE RLHEIYSKLK DEQNDAGVGP SYINSYGTLN SNQFPTLNND LQRRQRPYQH SSQPSEAFHR
1601: NQSTGKSEAW KRRKRSEMDN QLLIHSHCQP DMMSNGVRLN EQTNSAGILG KGPVEMRRYP NDRPNRAHPG RFPPGQGHMS
0001: MAFFRNYSND TVSHNVLDEN EERQNAATFQ SSPLNEDVDG TYSERGFDMN MDVQYQSDPE PGCSIRQPNE TAVDNVADPV DSHYQSSTKR LGVTGRWGST
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
Arabidopsis Description
CHR5Protein CHROMATIN REMODELING 5 [Source:UniProtKB/Swiss-Prot;Acc:F4IV99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.