Factsheet for GSMUA_AchrUn_randomP23230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066819	Potato	cytosol	52.16	68.19
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	67.42	53.34
VIT_15s0021g02180.t01	Wine grape	cytosol	71.75	40.7
TraesCS5A01G541400.1	Wheat	cytosol	71.96	39.57
HORVU4Hr1G088540.8	Barley	cytosol	71.75	39.46
OQU93492	Sorghum	cytosol	73.2	39.14
TraesCS4B01G372600.1	Wheat	cytosol	70.72	38.89
Zm00001d048552_P005	Maize	cytosol	71.13	38.16
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	69.07	37.98
CDX74702	Canola	cytosol	65.98	36.78
CDY18960	Canola	cytosol	65.36	36.48
KRH75253	Soybean	cytosol, nucleus, plastid	65.77	36.33
AT2G44980.2	Thale cress	cytosol	65.36	36.15
Bra004881.1-P	Field mustard	nucleus	36.49	27.36
GSMUA_Achr3P26090_001	Banana	cytosol	32.58	20.82
GSMUA_Achr4P25930_001	Banana	cytosol	29.69	17.84
GSMUA_Achr8P09960_001	Banana	nucleus	35.26	15.82
GSMUA_Achr3P23910_001	Banana	nucleus	34.43	15.62
GSMUA_Achr8P00120_001	Banana	nucleus	37.11	12.31
GSMUA_Achr6P02430_001	Banana	cytosol	22.89	12.29
GSMUA_Achr4P21270_001	Banana	cytosol	34.64	12.18
GSMUA_Achr6P20210_001	Banana	nucleus	33.61	11.12
GSMUA_Achr8P06840_001	Banana	nucleus	28.25	9.93
GSMUA_Achr8P29610_001	Banana	nucleus	34.23	9.88
GSMUA_Achr1P24350_001	Banana	nucleus	31.75	7.22
GSMUA_AchrUn_...	Banana	nucleus	31.34	7.08
GSMUA_AchrUn_...	Banana	nucleus, plastid	31.75	6.91
GSMUA_Achr9P11210_001	Banana	nucleus	27.63	6.51
GSMUA_Achr6P29570_001	Banana	nucleus	26.19	5.93
GSMUA_Achr3P26510_001	Banana	nucleus	17.53	5.22
GSMUA_AchrUn_...	Banana	cytosol, nucleus	1.86	2.71

Protein Annotations

MapMan:12.4.1.1.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	InterPro:ALC1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006338	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	EnsemblPlantsGene:GSMUA_AchrUn_randomG23230_001	EnsemblPlants:GSMUA_AchrUn_randomP23230_001	EnsemblPlants:GSMUA_AchrUn_randomT23230_001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:M0UBN1
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF813	SMART:SM00487	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI000296A443
SEG:seg	:	:	:	:	:

Description

Putative Chromodomain-helicase-DNA-binding protein 1-like [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23230_001]

Coordinates

chrchrUn_random:+:113568012..113573801

Molecular Weight (calculated)

55515.4 Da

IEP (calculated)

9.427

GRAVY (calculated)

0.063

Length

485 amino acids

Sequence
(BLAST)

001: MEYERRLLLA AKLVLSSDLC DEGGRPPDPA DLRITATVKP HQIEGVSWLI RRYHLGVNVI LGDEMGLGKT LQAISFLSYL KIQSLSCGPF LVLCPLSVTD
101: GWISEFTKFC PTLRVLLYVG EKKHRLGLRR MMYENLQRKS SFLDDLPFDV LLTTYDIALL DQNFLSQIPW HHVVIDEAQR LKNPYSVLYN VLEQKFIMPR
201: HLLLTGTPIQ NNLTELWALM HFCMPAVFGT LEQFFSTFKE AGISSKGSES DRVKRQFGIL RYILRAFMLR RTKAVLIERG TLTLPPLTEI TVMAPLMPLQ
301: RKVYMSILRK ELQTLLSISL GSTSNQSLRN IVIQLRKACS HPYLFTGMEP EPYEEGEHLV QASGKLIILD LLLQKLYAAG HRVLLFAQMT RTLDILQDFL
401: ELRKYTYERL DGSVRAEERF AAIRSFSKQP VKGDVIHQDK QDVAFVFMIS TRAGGVGLNL IAADTVSFKA TLCFSFWYFS WKVKF

Best Arabidopsis Sequence Match ( AT2G44980.3 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.