Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G541400.1 | Wheat | cytosol | 97.17 | 97.17 |
| TraesCS4B01G372600.1 | Wheat | cytosol | 96.71 | 96.71 |
| TraesCS4D01G364600.1 | Wheat | cytosol, mitochondrion | 95.46 | 95.46 |
| OQU93492 | Sorghum | cytosol | 82.65 | 80.37 |
| Zm00001d048552_P005 | Maize | cytosol | 81.18 | 79.2 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.46 | 71.75 |
| PGSC0003DMT400066819 | Potato | cytosol | 27.44 | 65.23 |
| VIT_15s0021g02180.t01 | Wine grape | cytosol | 61.79 | 63.74 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 43.65 | 62.81 |
| CDX74702 | Canola | cytosol | 61.34 | 62.18 |
| CDY18960 | Canola | cytosol | 60.88 | 61.8 |
| KRH75253 | Soybean | cytosol, nucleus, plastid | 61.22 | 61.5 |
| AT2G44980.2 | Thale cress | cytosol | 61.0 | 61.35 |
| Bra004881.1-P | Field mustard | nucleus | 43.76 | 59.66 |
| HORVU2Hr1G022450.1 | Barley | nucleus | 17.69 | 27.18 |
| HORVU3Hr1G012850.1 | Barley | nucleus | 25.96 | 20.21 |
| HORVU1Hr1G021540.17 | Barley | plasma membrane | 25.74 | 19.22 |
| Os03t0352500-01 | Rice | nucleus | 3.74 | 15.42 |
| HORVU4Hr1G046140.4 | Barley | nucleus | 23.47 | 13.61 |
| HORVU6Hr1G006050.1 | Barley | plastid | 24.04 | 9.58 |
| HORVU7Hr1G041450.33 | Barley | nucleus | 24.26 | 8.55 |
| Os03t0352450-00 | Rice | nucleus | 1.25 | 2.4 |
Protein Annotations
| MapMan:12.4.1.1.1 | Gene3D:3.40.220.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ProteinID:AAS58478.1 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:HORVU4Hr1G088540 | EnsemblPlants:HORVU4Hr1G088540.8 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 |
| UniProt:Q6RYF0 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| SUPFAM:SSF52949 | UniParc:UPI00000ADCD8 | SEG:seg | : | : | : |
Description
SNF2P [Source:UniProtKB/TrEMBL;Acc:Q6RYF0]
Coordinates
chrchr4H:-:640595868..640611352
Molecular Weight (calculated)
99164.1 Da
IEP (calculated)
6.845
GRAVY (calculated)
-0.273
Length
882 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATAYERRL LAAADLVLSA DGKSQLPRLS SADLGVTADL KPHQLDGVHW LIRRYHLGVN VLLGDEMGLG KTLQAISLLS YLKIKSIAPG PFLVLCPLSV
101: TDGWLSEFGK FCPTLKVIQY VGDKAHRRHI RRTMHDDVQK SSHSNELPFD VMLTSYDIAL MDQDFLSQIP WLYVVIDEAQ RLKNPSSVLY NVLEERFMMP
201: RRLLLTGTPV QNNLSELWAL MHFCMPSVFG PLDEFLSTFK EAGNLLSGSE ANQANRQFKI LKHILRAFML RRTKALLIES GILELPPLTE LTVMVPLAPL
301: QKKIYLSVLR KELQTLLSFT GGSSRHQSLQ NIVVQLRKAC SHPYLFSGIE PEPYEEGEHL VQASGKLIVL DLVLEKLHRL GHRVVLFAQM TQTLDILQDF
401: LELRNYTYER LDGSVRAEER FAAIRNFSSQ PTKGVVRDDN NPSGAFIFMI STRAGGVGLN LIGADTVIFY EQDWNPQADK QALQRTHRIG QLNHVLSINL
501: VSQRTIEEVI MRRAERKLKL SHNIFGDKDA TDGKGKDFGN EANDMRSIIL GLHQFDPADT AAETINEETL AKLKSMSENV IKMRTHEPSE KDDRAFEINP
601: DLTDGSGAMI TRACDSISID PGVDEAAYLS WVERFKEASH SIEDVPVELE RQRPAPEDKL LKREANKKKA EEKRLAKWKD LGYQTLGVKV PDNIPNQNIS
701: DSGSVQLVYG DCTDPSKVCA AKPAIIFSCV DNSGTWGHGG MFDALTSLST YIPDAYHRAS EVDDLHMGDL HLIELDEANC SRSLDAPLWV ALAVVQSYNP
801: KRKIPRSEIS MSDLELCLSK AAFSAAQRSA SIHMPRIGQR SGSQRSEWYT IERLLRKYAS LHGIDIFVYY FRRPSRQQPD SD
101: TDGWLSEFGK FCPTLKVIQY VGDKAHRRHI RRTMHDDVQK SSHSNELPFD VMLTSYDIAL MDQDFLSQIP WLYVVIDEAQ RLKNPSSVLY NVLEERFMMP
201: RRLLLTGTPV QNNLSELWAL MHFCMPSVFG PLDEFLSTFK EAGNLLSGSE ANQANRQFKI LKHILRAFML RRTKALLIES GILELPPLTE LTVMVPLAPL
301: QKKIYLSVLR KELQTLLSFT GGSSRHQSLQ NIVVQLRKAC SHPYLFSGIE PEPYEEGEHL VQASGKLIVL DLVLEKLHRL GHRVVLFAQM TQTLDILQDF
401: LELRNYTYER LDGSVRAEER FAAIRNFSSQ PTKGVVRDDN NPSGAFIFMI STRAGGVGLN LIGADTVIFY EQDWNPQADK QALQRTHRIG QLNHVLSINL
501: VSQRTIEEVI MRRAERKLKL SHNIFGDKDA TDGKGKDFGN EANDMRSIIL GLHQFDPADT AAETINEETL AKLKSMSENV IKMRTHEPSE KDDRAFEINP
601: DLTDGSGAMI TRACDSISID PGVDEAAYLS WVERFKEASH SIEDVPVELE RQRPAPEDKL LKREANKKKA EEKRLAKWKD LGYQTLGVKV PDNIPNQNIS
701: DSGSVQLVYG DCTDPSKVCA AKPAIIFSCV DNSGTWGHGG MFDALTSLST YIPDAYHRAS EVDDLHMGDL HLIELDEANC SRSLDAPLWV ALAVVQSYNP
801: KRKIPRSEIS MSDLELCLSK AAFSAAQRSA SIHMPRIGQR SGSQRSEWYT IERLLRKYAS LHGIDIFVYY FRRPSRQQPD SD
001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP
Arabidopsis Description
CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.