Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g079690.2.1 | Tomato | nucleus | 48.19 | 66.83 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 52.83 | 66.09 |
| KRH27613 | Soybean | nucleus | 50.22 | 65.19 |
| KRH35559 | Soybean | nucleus | 50.43 | 64.93 |
| KRG91253 | Soybean | nucleus | 50.14 | 64.49 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 40.43 | 61.73 |
| CDY18840 | Canola | nucleus | 48.26 | 61.5 |
| AT3G06010.1 | Thale cress | nucleus | 48.84 | 61.16 |
| Bra040237.1-P | Field mustard | nucleus | 48.41 | 60.73 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 63.62 | 59.89 |
| Zm00001d024816_P007 | Maize | cytosol | 47.68 | 59.28 |
| AT5G19310.1 | Thale cress | nucleus | 45.65 | 59.21 |
| Os05t0144300-01 | Rice | nucleus | 48.12 | 58.87 |
| Zm00001d006798_P002 | Maize | nucleus | 47.54 | 58.78 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 48.33 | 58.77 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 48.33 | 58.66 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 47.9 | 58.65 |
| GSMUA_Achr3P26090_001 | Banana | cytosol | 16.52 | 30.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 9.93 | 28.25 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 19.57 | 24.98 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 19.35 | 24.98 |
| GSMUA_Achr6P02430_001 | Banana | cytosol | 16.16 | 24.7 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 13.12 | 22.43 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 16.81 | 16.82 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 16.96 | 16.01 |
| GSMUA_Achr8P29610_001 | Banana | nucleus | 18.48 | 15.18 |
| GSMUA_Achr1P24350_001 | Banana | nucleus | 22.17 | 14.35 |
| GSMUA_AchrUn_... | Banana | nucleus, plastid | 22.39 | 13.86 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 3.26 | 13.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.8 | 13.37 |
| GSMUA_Achr9P11210_001 | Banana | nucleus | 14.64 | 9.82 |
| GSMUA_Achr6P29570_001 | Banana | nucleus | 15.0 | 9.66 |
| GSMUA_Achr3P26510_001 | Banana | nucleus | 11.23 | 9.53 |
Protein Annotations
| Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0042393 | EnsemblPlantsGene:GSMUA_Achr8G06840_001 | EnsemblPlants:GSMUA_Achr8P06840_001 |
| EnsemblPlants:GSMUA_Achr8T06840_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| UniProt:M0TN87 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF14619 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 | SMART:SM00490 | SMART:SM01314 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | InterPro:SnAC | UniParc:UPI000294ABCC | SEG:seg |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G06840_001]
Coordinates
chr8:-:4437416..4459175
Molecular Weight (calculated)
157959.0 Da
IEP (calculated)
8.971
GRAVY (calculated)
-0.392
Length
1380 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVASVAEEPR HAPDRRAEQA KTLVGALNLL SRNLPLPPDV FRAVSSIYHG DEPSELQEMV EGGGAPASAE SIAINGVPGE GSLIVALEDV LLNQQSTRMC
0101: SSALRESKER HFNSLIQHRL AELEVLPSSR GEDLQMKCLL ELYGIKLVDL QRKVRSQVSA EYWLHKKCAH PGKTLFDWGM MRLTYPFNMY GTGDSFAMEA
0201: DNRRRKKRYV ERLSKLEEDE KNQADIGKRK FFADVLNAAR EFQLQTQAVL KRRKQRNDGV QAWHARQRQR ATRAEKLRFQ ALKADDQEAY MRMVEESKNE
0301: RLTMLLGKTN ELLVCLGAAV QRQKDAEHTD GVEAVKDSAT DLLEGQRQYD SAVHSIQEKV TEQPSMLQGG ELRPYQLEGL QWMLSLFNNN LNGILADEMG
0401: LGKTIQTIAL IAYLMENKCV TGPHLIVAPK AVLPNWINEF STWAPSIVAV LYDGRLNERK AMREEYSGQG KFNVMITHYD LIMRDKAFLK KIHWYYMIVD
0501: EGHRLKNHEC VLAKTLISGY HIRRRLLLTG TPIQNSLQEL WALLNFLLPS IFNSVQNFEE WFNAPFADKC EVTLTDEEEL LIIRRLHQVI RPFLLRRKKD
0601: EVEKYLPGKT QVILKCDLSA WQKAYYQQIT DIGRVGLESG LPYCLVQAVY TSPIKDQYWW YRGTSVRPHV SCVTRYSLVQ FGMYHIDSWL VHRDEPRKEG
0701: INTGLRWSYT TNILNSKIFS LVIKLIISSS LAREIHISFL FSFLFSQAED SLQTNYIFEK KKQPLKPNYS KDSKMAYASH MLFYGGFIRM QLKLAKEMMT
0801: LEEIKEQSFI NFINQSILYL KDFSLLIWIG CVEQKLFEIV PAILKKIGKR AFCETWDIQT PIGSCRNLIS EMLKTDLLAI GTCNTKSVEK LISVSSFFKI
0901: HSFVTLFGAT TGCWLIVAGC LFLPYIILTI NMAGIPELIR EKRKLRTIKI YVMSAHTCDS YSLSYSNGLD VMNPRTGSLT KSLNGLRNIG QFFSLLTQKS
1001: LYNLKILFCQ PPSKSLQNLS MQLRKCCNHP YLFLHGFKYL RLDGSTKTDD RGMFLKQFNA PNSPYFMFLL STRAGGLGLN LQSADTVIIF DSDWNPQMDQ
1101: QAEDRAHRIG QKKEVRVFVL VSVGSIEEEI LERAKQKMGI DAKVIQAGLF NTTSTAQDRR VMLQEIMRRG TNSLGTDVPS ETEINRLAAR TEEEFWLFEK
1201: VDEERRQKER YKSRLMEEKE VPDWVYHKTN QEKTKESIGV DTRSGEVTGK RRRKEVIYTD LLSDVQWMKA VEDGGDLSKL SSAGKRSRFL FGTHESGEQP
1301: SESDEVVGQN MTKEKNMDSM VSVGVSDDSS KKPVKYQSGN LPDNKDEEGD AGGWQEKIIT WRSHKRKRSS HGVSSSASDI
0101: SSALRESKER HFNSLIQHRL AELEVLPSSR GEDLQMKCLL ELYGIKLVDL QRKVRSQVSA EYWLHKKCAH PGKTLFDWGM MRLTYPFNMY GTGDSFAMEA
0201: DNRRRKKRYV ERLSKLEEDE KNQADIGKRK FFADVLNAAR EFQLQTQAVL KRRKQRNDGV QAWHARQRQR ATRAEKLRFQ ALKADDQEAY MRMVEESKNE
0301: RLTMLLGKTN ELLVCLGAAV QRQKDAEHTD GVEAVKDSAT DLLEGQRQYD SAVHSIQEKV TEQPSMLQGG ELRPYQLEGL QWMLSLFNNN LNGILADEMG
0401: LGKTIQTIAL IAYLMENKCV TGPHLIVAPK AVLPNWINEF STWAPSIVAV LYDGRLNERK AMREEYSGQG KFNVMITHYD LIMRDKAFLK KIHWYYMIVD
0501: EGHRLKNHEC VLAKTLISGY HIRRRLLLTG TPIQNSLQEL WALLNFLLPS IFNSVQNFEE WFNAPFADKC EVTLTDEEEL LIIRRLHQVI RPFLLRRKKD
0601: EVEKYLPGKT QVILKCDLSA WQKAYYQQIT DIGRVGLESG LPYCLVQAVY TSPIKDQYWW YRGTSVRPHV SCVTRYSLVQ FGMYHIDSWL VHRDEPRKEG
0701: INTGLRWSYT TNILNSKIFS LVIKLIISSS LAREIHISFL FSFLFSQAED SLQTNYIFEK KKQPLKPNYS KDSKMAYASH MLFYGGFIRM QLKLAKEMMT
0801: LEEIKEQSFI NFINQSILYL KDFSLLIWIG CVEQKLFEIV PAILKKIGKR AFCETWDIQT PIGSCRNLIS EMLKTDLLAI GTCNTKSVEK LISVSSFFKI
0901: HSFVTLFGAT TGCWLIVAGC LFLPYIILTI NMAGIPELIR EKRKLRTIKI YVMSAHTCDS YSLSYSNGLD VMNPRTGSLT KSLNGLRNIG QFFSLLTQKS
1001: LYNLKILFCQ PPSKSLQNLS MQLRKCCNHP YLFLHGFKYL RLDGSTKTDD RGMFLKQFNA PNSPYFMFLL STRAGGLGLN LQSADTVIIF DSDWNPQMDQ
1101: QAEDRAHRIG QKKEVRVFVL VSVGSIEEEI LERAKQKMGI DAKVIQAGLF NTTSTAQDRR VMLQEIMRRG TNSLGTDVPS ETEINRLAAR TEEEFWLFEK
1201: VDEERRQKER YKSRLMEEKE VPDWVYHKTN QEKTKESIGV DTRSGEVTGK RRRKEVIYTD LLSDVQWMKA VEDGGDLSKL SSAGKRSRFL FGTHESGEQP
1301: SESDEVVGQN MTKEKNMDSM VSVGVSDDSS KKPVKYQSGN LPDNKDEEGD AGGWQEKIIT WRSHKRKRSS HGVSSSASDI
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
Arabidopsis Description
CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.