Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g029120.1.1 | Tomato | nucleus | 36.62 | 71.53 |
| KRH05279 | Soybean | nucleus | 21.54 | 65.56 |
| KXG19483 | Sorghum | cytosol | 59.1 | 61.56 |
| Zm00001d045109_P008 | Maize | cytosol | 58.52 | 60.49 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 59.03 | 60.07 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 64.03 | 59.99 |
| CDY56279 | Canola | cytosol | 58.23 | 59.79 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 58.74 | 59.6 |
| KRH61691 | Soybean | nucleus | 62.07 | 59.36 |
| KRH52357 | Soybean | nucleus | 61.64 | 59.03 |
| Bra007814.1-P | Field mustard | nucleus | 58.38 | 58.97 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 58.38 | 58.5 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 58.59 | 57.3 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 57.8 | 56.73 |
| Solyc06g065730.2.1 | Tomato | nucleus | 58.96 | 56.58 |
| CDX75208 | Canola | cytosol | 48.44 | 55.85 |
| Bra011311.1-P | Field mustard | nucleus | 48.51 | 55.11 |
| CDX68802 | Canola | cytosol | 48.44 | 55.02 |
| AT4G31900.1 | Thale cress | nucleus | 44.52 | 51.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.18 | 34.64 |
| GSMUA_Achr3P26090_001 | Banana | cytosol | 16.75 | 30.43 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 20.74 | 26.46 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 20.3 | 26.19 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 14.14 | 24.16 |
| GSMUA_Achr8P29610_001 | Banana | nucleus | 23.79 | 19.52 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 18.56 | 17.46 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 16.82 | 16.81 |
| GSMUA_Achr6P02430_001 | Banana | cytosol | 10.59 | 16.17 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 17.11 | 16.14 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 3.7 | 15.36 |
| GSMUA_Achr9P11210_001 | Banana | nucleus | 22.34 | 14.97 |
| GSMUA_Achr6P29570_001 | Banana | nucleus | 22.34 | 14.38 |
| GSMUA_Achr3P26510_001 | Banana | nucleus | 13.2 | 11.19 |
| GSMUA_Achr1P24350_001 | Banana | nucleus | 16.82 | 10.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.82 | 10.81 |
| GSMUA_AchrUn_... | Banana | nucleus, plastid | 17.33 | 10.72 |
Protein Annotations
| MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr4G21270_001 | EnsemblPlants:GSMUA_Achr4P21270_001 | EnsemblPlants:GSMUA_Achr4T21270_001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 |
| InterPro:IPR038718 | UniProt:M0SQU0 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 |
| PFAM:PF06461 | PFAM:PF06465 | ScanProsite:PS01359 | PFscan:PS50013 | PFscan:PS50016 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 | SMART:SM00249 | SMART:SM00298 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM01146 | SMART:SM01147 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| SUPFAM:SSF54160 | UniParc:UPI000296567E | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
CHD3-type chromatin-remodeling factor PICKLE [Source:GMGC_GENE;Acc:GSMUA_Achr4G21270_001]
Coordinates
chr4:+:21778820..21809078
Molecular Weight (calculated)
159657.0 Da
IEP (calculated)
6.499
GRAVY (calculated)
-0.663
Length
1379 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSLVERLRV RSEKRPLYNL DDSDDDDFVV GKGSKSKQEE KPAEKIERDD AKEDSCQMCG TSGSLIPCAT CTYAFHKRCL YPTSKAVLGD KWSCPECVSP
0101: LTEIEKILDC EMRPTVVDEN DSSKSSSNQS YAKQYLVKWK GFSYLHCIWV PEKEFLRASK THPRLKSRLN NFHKQLESMK NSDDDWVAIR PEWTTVDRII
0201: SSRKTDDERE FLVKWKDLSY DECTWEVETD ISTFRPEIER YEMILSRRSK KFSNKSRNAI RDSKELKQKH KEFQHCDCSP EFISGTLHAY QLEGLNFLRF
0301: SWSKNTHVIL ADEMGLGKTI QSIAFLASLF EENISPHLVV APLSTLRNWE REFATWAPQM NVVMYGGSSQ ARDVIKQYEF YYPKEKVKKQ KKRKPIQTSN
0401: QKKQSIIKFN VLLTSYEMIN MDSAVLKSIE WESMIVDEGH RLKNKDSKLF HQLKLYSTKH RVLLTGTPLQ NNLDELFMLM HFLDAGKFAS IEDFQKEFKD
0501: INQEEQIDRL HKMLAPHLLR RVKKDVMKDL PPKKELILRV ELSSKQKEYY KAILTRNYQI LARRGGAQIS LINVVMELRK LCCHAYMLEG VEPATEPTDP
0601: VEGLRQLLDA SGKMQLLDKM MVKLKEQGHR VLIYSQFQHM LDLLEDYLSY KKWTYERIDG KVSGAERQIR IDRFNAKNST KFCFLLSTRA GGLGINLATA
0701: DTVFIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLITRG TIEERMMQMT KKKMILEHLV VGRLKAQNEE LDDIIRYGSK ELFVDESDEA KSRQIHYDDS
0801: AIDRQDFNKE DDFLKAFKVA NFEYIDEVEA AAAEEEESKK QLPNEKASNS NTDRANYWDE LLKDRYEVQQ IEEFTSMGKG KRSRKQMASA EEDIAGLRDV
0901: TSEDEDYSYE DDLTDTEASI PGSVSGRRGQ FSKRKTRGYL EPIPLMEGEG KSFRVLGFNQ NQRSLFQQLV MRFGFHDYSW KEYLPRLKGK SWQEVQDYAE
1001: LFMRHLQEDI TDLPNFSDGV PKEGARVDDI LVRIAHIQLI EEKMKFMREN PGANLFPEDV LLHFPGLAGR FWKEEHDLLL LKAKLKHGYA RWQYIIEDEE
1101: AGIIDIVRRE LNLPTRSFSG SVQTNESANS AQPANTAHNA NGSTEAAKAG YNSYQSRELQ RRLVESIRKR YFLLEKALEL ECYKKKYASE QATQDPQVDP
1201: KVSEVNNSEL LDVDELLRQM PQLEHICPEE LACDNKDGRT ELGRLYNEMC MVVEENAVDT MQAHLDDASA ISRLKKRLHQ LEIIHEDVHQ ILAERGQPSA
1301: TEGSNVNAAD TKCYINRESS EAVLTSQQEP ECKIASSNEK TALERPEQAK INHLKGINAF QQCTAAFICY QGLAFFCAY
0101: LTEIEKILDC EMRPTVVDEN DSSKSSSNQS YAKQYLVKWK GFSYLHCIWV PEKEFLRASK THPRLKSRLN NFHKQLESMK NSDDDWVAIR PEWTTVDRII
0201: SSRKTDDERE FLVKWKDLSY DECTWEVETD ISTFRPEIER YEMILSRRSK KFSNKSRNAI RDSKELKQKH KEFQHCDCSP EFISGTLHAY QLEGLNFLRF
0301: SWSKNTHVIL ADEMGLGKTI QSIAFLASLF EENISPHLVV APLSTLRNWE REFATWAPQM NVVMYGGSSQ ARDVIKQYEF YYPKEKVKKQ KKRKPIQTSN
0401: QKKQSIIKFN VLLTSYEMIN MDSAVLKSIE WESMIVDEGH RLKNKDSKLF HQLKLYSTKH RVLLTGTPLQ NNLDELFMLM HFLDAGKFAS IEDFQKEFKD
0501: INQEEQIDRL HKMLAPHLLR RVKKDVMKDL PPKKELILRV ELSSKQKEYY KAILTRNYQI LARRGGAQIS LINVVMELRK LCCHAYMLEG VEPATEPTDP
0601: VEGLRQLLDA SGKMQLLDKM MVKLKEQGHR VLIYSQFQHM LDLLEDYLSY KKWTYERIDG KVSGAERQIR IDRFNAKNST KFCFLLSTRA GGLGINLATA
0701: DTVFIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLITRG TIEERMMQMT KKKMILEHLV VGRLKAQNEE LDDIIRYGSK ELFVDESDEA KSRQIHYDDS
0801: AIDRQDFNKE DDFLKAFKVA NFEYIDEVEA AAAEEEESKK QLPNEKASNS NTDRANYWDE LLKDRYEVQQ IEEFTSMGKG KRSRKQMASA EEDIAGLRDV
0901: TSEDEDYSYE DDLTDTEASI PGSVSGRRGQ FSKRKTRGYL EPIPLMEGEG KSFRVLGFNQ NQRSLFQQLV MRFGFHDYSW KEYLPRLKGK SWQEVQDYAE
1001: LFMRHLQEDI TDLPNFSDGV PKEGARVDDI LVRIAHIQLI EEKMKFMREN PGANLFPEDV LLHFPGLAGR FWKEEHDLLL LKAKLKHGYA RWQYIIEDEE
1101: AGIIDIVRRE LNLPTRSFSG SVQTNESANS AQPANTAHNA NGSTEAAKAG YNSYQSRELQ RRLVESIRKR YFLLEKALEL ECYKKKYASE QATQDPQVDP
1201: KVSEVNNSEL LDVDELLRQM PQLEHICPEE LACDNKDGRT ELGRLYNEMC MVVEENAVDT MQAHLDDASA ISRLKKRLHQ LEIIHEDVHQ ILAERGQPSA
1301: TEGSNVNAAD TKCYINRESS EAVLTSQQEP ECKIASSNEK TALERPEQAK INHLKGINAF QQCTAAFICY QGLAFFCAY
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.