Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75208 | Canola | cytosol | 96.05 | 97.49 |
| Solyc08g029120.1.1 | Tomato | nucleus | 36.0 | 61.9 |
| KRH05279 | Soybean | nucleus | 22.49 | 60.26 |
| CDY56279 | Canola | cytosol | 65.16 | 58.9 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 65.07 | 57.41 |
| AT4G31900.1 | Thale cress | nucleus | 56.1 | 56.66 |
| KRH61691 | Soybean | nucleus | 58.98 | 49.65 |
| KRH52357 | Soybean | nucleus | 58.9 | 49.65 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 60.05 | 49.52 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 55.02 | 48.44 |
| Solyc06g065730.2.1 | Tomato | nucleus | 57.08 | 48.23 |
| KXG19483 | Sorghum | cytosol | 50.99 | 46.75 |
| Zm00001d045109_P008 | Maize | cytosol | 50.41 | 45.88 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 50.99 | 45.68 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 50.91 | 45.47 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 50.82 | 43.91 |
| CDY47176 | Canola | cytosol | 16.06 | 41.14 |
| CDX92595 | Canola | nucleus | 20.76 | 28.19 |
| CDY57125 | Canola | cytosol | 17.71 | 28.07 |
| CDX81370 | Canola | cytosol | 17.63 | 27.94 |
| CDY30755 | Canola | cytosol | 17.71 | 27.78 |
| CDY53848 | Canola | cytosol | 17.63 | 27.76 |
| CDY18960 | Canola | cytosol | 18.62 | 26.01 |
| CDY18857 | Canola | nucleus | 22.41 | 25.93 |
| CDX74702 | Canola | cytosol | 18.53 | 25.86 |
| CDY24695 | Canola | nucleus | 22.24 | 25.64 |
| CDY13907 | Canola | nucleus | 22.16 | 25.4 |
| CDY04120 | Canola | cytosol | 15.82 | 25.26 |
| CDY48619 | Canola | nucleus, plastid | 15.9 | 25.23 |
| CDY02609 | Canola | nucleus | 21.42 | 24.64 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 22.41 | 24.01 |
| CDY18840 | Canola | nucleus | 20.02 | 22.44 |
| CDY67658 | Canola | cytosol, nucleus | 20.43 | 21.97 |
| CDY68094 | Canola | nucleus | 20.43 | 19.89 |
| CDY37209 | Canola | nucleus | 25.37 | 18.27 |
| CDX81444 | Canola | nucleus | 25.21 | 18.07 |
| CDY30994 | Canola | nucleus | 7.83 | 14.84 |
| CDX72050 | Canola | cytosol | 17.3 | 14.26 |
| CDX88940 | Canola | nucleus | 18.78 | 13.78 |
| CDX95673 | Canola | cytosol | 10.96 | 13.52 |
| CDY08401 | Canola | nucleus | 21.83 | 13.22 |
| CDY52874 | Canola | nucleus | 21.83 | 13.14 |
| CDY06115 | Canola | nucleus | 17.38 | 11.21 |
| CDY27338 | Canola | nucleus, plastid | 19.28 | 11.12 |
| CDY37083 | Canola | plastid | 19.19 | 11.05 |
| CDX83383 | Canola | nucleus, plastid | 18.7 | 10.63 |
| CDY14410 | Canola | nucleus | 21.25 | 10.31 |
| CDY07678 | Canola | nucleus | 20.84 | 9.21 |
| CDX95672 | Canola | plastid | 4.61 | 5.19 |
| CDY71637 | Canola | nucleus | 1.57 | 2.57 |
Protein Annotations
| MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078BWZ2 | EnsemblPlants:CDX68802 |
| ProteinID:CDX68802 | ProteinID:CDX68802.1 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil |
| InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00130520001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | PFAM:PF06461 |
| PFAM:PF06465 | PFscan:PS50013 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 |
| SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01146 | SMART:SM01147 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | UniParc:UPI0004EF0461 | SEG:seg | : |
Description
BnaC01g06510D
Coordinates
chrLK031789:+:1349954..1356995
Molecular Weight (calculated)
140894.0 Da
IEP (calculated)
5.371
GRAVY (calculated)
-0.602
Length
1214 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTGLAGSRLR KRPDRRPFYT VDDSDDDDDF VQNKDQTTEI VEGTVGREAV TPLTEMEKIL DCQMRPTTSN DPDSSDIAAP KQVVVKQYLV KWKGLSYLHC
0101: SWVAEEEFQK AYKFIRRLRS RVIKFHSTME SMSNSGDDFV AIHPEWTPVD RIIDCRGEGE DKEYLVKFKE LSYDECYWES ESDISTFQNE IQRFKDINSG
0201: HRRDKYVDHE RNYEDFKQFD HTPEFITGSL HPYQLEGLNF LRFTWSNRTH VILADEMGLG KTIQSIAFLA SLFEENLAPY LVVAPLSTLR NWEREFATWA
0301: PHMNVVMYCG NSQARTVVRD HEFYFPKESR QDRIKFDVIL TSYEMINVDT EVLKPIKWKC MIVDEGHRLK NKNSKLFNSL KQYTSEHRIL LTGTPLQNNL
0401: DELFVLMHFL DAEKFGSLEE FQEQFKDIDQ EEQISRLHKM LAPHLLRRVK KDVLKDMPSK KELILRVDLS SKQKIIYKAI MTRNYKILAK RGAKISNVLM
0501: ELRKACLHPY MVEGVESQIK DENEALKELL ESSGKLQLLD QMMVKLKEQG HRVLIYSQFQ HMLDLLEDYC AYKKWFYERI DGKVNGAERQ ARIDRFNAKK
0601: SNRFCFLLST RAGGVGINLA TADTVFIYDS DWNPYADLQA MARAHRIGQT EKVMIYRLIS RGTIEEKIVQ ICKRKMLLEH LVVGKLKAPN LSQEELDDII
0701: RYGSKELFAE ENDEAGKFGK IHYDDAAIEK LLDRDHIDAE EDSVDDENEN GFFKAFKVAN FEFIDDNEAA ASEEAQAIES KSSSENYWEY LLKDKYEVQQ
0801: AEEVNALGKR KRNCKQKLGE DELAYLEASS DNEEDEQTEA EDELAYLEVS SDDEEAEQND GVASGQGNQI AYWPCSSRTP EDELACFEAS SAYEEANPMD
0901: GEAARQGNQL AKRPYHRTRD TLEPIPLIEG EGRFLKVLGF NELQRKKFLT TLERYGVGNY DWKEFVDPLK PRTYDEIRSY GLRFLKHIVE DKDVNSPTFS
1001: DGVPKEGLKC KDVLARIASV MLVQKKVKHM EANPRNPVFS DRIIHRFPGL RLRKAKFANE ECDRILLRAV SKNGVGKWRA LVNDREFGIY ELVRKELNIP
1101: PTSFINANGI VKDPHIIITD HMRRRFLILE EAIINEFAED YYFGQKPSSL NRALQNGLLN QRIDLFSAKF RLLTERALHE FASKNISRNL SAIGTYVNVN
1201: MEDEQVTEVI MLDD
0101: SWVAEEEFQK AYKFIRRLRS RVIKFHSTME SMSNSGDDFV AIHPEWTPVD RIIDCRGEGE DKEYLVKFKE LSYDECYWES ESDISTFQNE IQRFKDINSG
0201: HRRDKYVDHE RNYEDFKQFD HTPEFITGSL HPYQLEGLNF LRFTWSNRTH VILADEMGLG KTIQSIAFLA SLFEENLAPY LVVAPLSTLR NWEREFATWA
0301: PHMNVVMYCG NSQARTVVRD HEFYFPKESR QDRIKFDVIL TSYEMINVDT EVLKPIKWKC MIVDEGHRLK NKNSKLFNSL KQYTSEHRIL LTGTPLQNNL
0401: DELFVLMHFL DAEKFGSLEE FQEQFKDIDQ EEQISRLHKM LAPHLLRRVK KDVLKDMPSK KELILRVDLS SKQKIIYKAI MTRNYKILAK RGAKISNVLM
0501: ELRKACLHPY MVEGVESQIK DENEALKELL ESSGKLQLLD QMMVKLKEQG HRVLIYSQFQ HMLDLLEDYC AYKKWFYERI DGKVNGAERQ ARIDRFNAKK
0601: SNRFCFLLST RAGGVGINLA TADTVFIYDS DWNPYADLQA MARAHRIGQT EKVMIYRLIS RGTIEEKIVQ ICKRKMLLEH LVVGKLKAPN LSQEELDDII
0701: RYGSKELFAE ENDEAGKFGK IHYDDAAIEK LLDRDHIDAE EDSVDDENEN GFFKAFKVAN FEFIDDNEAA ASEEAQAIES KSSSENYWEY LLKDKYEVQQ
0801: AEEVNALGKR KRNCKQKLGE DELAYLEASS DNEEDEQTEA EDELAYLEVS SDDEEAEQND GVASGQGNQI AYWPCSSRTP EDELACFEAS SAYEEANPMD
0901: GEAARQGNQL AKRPYHRTRD TLEPIPLIEG EGRFLKVLGF NELQRKKFLT TLERYGVGNY DWKEFVDPLK PRTYDEIRSY GLRFLKHIVE DKDVNSPTFS
1001: DGVPKEGLKC KDVLARIASV MLVQKKVKHM EANPRNPVFS DRIIHRFPGL RLRKAKFANE ECDRILLRAV SKNGVGKWRA LVNDREFGIY ELVRKELNIP
1101: PTSFINANGI VKDPHIIITD HMRRRFLILE EAIINEFAED YYFGQKPSSL NRALQNGLLN QRIDLFSAKF RLLTERALHE FASKNISRNL SAIGTYVNVN
1201: MEDEQVTEVI MLDD
0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.