Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040237.1-P | Field mustard | nucleus | 99.82 | 98.27 |
| AT3G06010.1 | Thale cress | nucleus | 90.95 | 89.38 |
| KRH35559 | Soybean | nucleus | 71.84 | 72.57 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 73.78 | 72.44 |
| KRG91253 | Soybean | nucleus | 71.47 | 72.13 |
| KRH27613 | Soybean | nucleus | 70.08 | 71.4 |
| Solyc01g079690.2.1 | Tomato | nucleus | 65.0 | 70.75 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 52.54 | 62.94 |
| Zm00001d024816_P007 | Maize | cytosol | 60.11 | 58.65 |
| Os05t0144300-01 | Rice | nucleus | 60.94 | 58.51 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.39 | 58.03 |
| Zm00001d006798_P002 | Maize | nucleus | 59.56 | 57.8 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 60.02 | 57.27 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 60.11 | 57.26 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 67.59 | 49.93 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 61.5 | 48.26 |
| CDY47176 | Canola | cytosol | 20.31 | 46.41 |
| CDY53848 | Canola | cytosol | 23.92 | 33.59 |
| CDX81370 | Canola | cytosol | 23.73 | 33.55 |
| CDY57125 | Canola | cytosol | 23.73 | 33.55 |
| CDY30755 | Canola | cytosol | 23.73 | 33.2 |
| CDX92595 | Canola | nucleus | 25.76 | 31.21 |
| CDY18857 | Canola | nucleus | 27.05 | 27.93 |
| CDY04120 | Canola | cytosol | 19.58 | 27.89 |
| CDY48619 | Canola | nucleus, plastid | 19.58 | 27.71 |
| CDY24695 | Canola | nucleus | 26.87 | 27.64 |
| CDY13907 | Canola | nucleus | 26.87 | 27.48 |
| CDY02609 | Canola | nucleus | 25.95 | 26.64 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 26.96 | 25.77 |
| CDY18960 | Canola | cytosol | 19.02 | 23.71 |
| CDX74702 | Canola | cytosol | 19.02 | 23.68 |
| CDX75208 | Canola | cytosol | 22.25 | 20.15 |
| CDX68802 | Canola | cytosol | 22.44 | 20.02 |
| CDY56279 | Canola | cytosol | 22.62 | 18.24 |
| CDY30994 | Canola | nucleus | 10.71 | 18.12 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 22.81 | 17.95 |
| CDY37209 | Canola | nucleus | 26.69 | 17.14 |
| CDX81444 | Canola | nucleus | 26.78 | 17.13 |
| CDY67658 | Canola | cytosol, nucleus | 16.99 | 16.3 |
| CDX72050 | Canola | cytosol | 21.98 | 16.16 |
| CDX88940 | Canola | nucleus | 23.64 | 15.48 |
| CDY27338 | Canola | nucleus, plastid | 30.01 | 15.45 |
| CDY37083 | Canola | plastid | 30.01 | 15.41 |
| CDX83383 | Canola | nucleus, plastid | 30.1 | 15.27 |
| CDY68094 | Canola | nucleus | 17.27 | 15.0 |
| CDX95673 | Canola | cytosol | 13.57 | 14.94 |
| CDY14410 | Canola | nucleus | 32.13 | 13.9 |
| CDY08401 | Canola | nucleus | 25.48 | 13.77 |
| CDY52874 | Canola | nucleus | 25.39 | 13.63 |
| CDY07678 | Canola | nucleus | 32.23 | 12.7 |
| CDY06115 | Canola | nucleus | 21.98 | 12.64 |
| CDX95672 | Canola | plastid | 11.27 | 11.3 |
| CDY71637 | Canola | nucleus | 5.45 | 7.97 |
Protein Annotations
| MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078FWN2 | UniProt:A0A078FWN2 | EnsemblPlants:CDY18840 |
| ProteinID:CDY18840 | ProteinID:CDY18840.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009408 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009653 | GO:GO:0009791 |
| GO:GO:0010078 | GO:GO:0010231 | GO:GO:0010492 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00006015001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFAM:PF14619 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01314 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| InterPro:SnAC | UniParc:UPI0004EDD0FC | SEG:seg | : | : | : |
Description
BnaAnng03050DProbable ATP-dependent DNA helicase CHR12 [Source:Projected from Arabidopsis thaliana (AT3G06010) UniProtKB/Swiss-Prot;Acc:F4J9M5]
Coordinates
chrLK032089:-:502655..507831
Molecular Weight (calculated)
124231.0 Da
IEP (calculated)
7.865
GRAVY (calculated)
-0.625
Length
1083 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVAQQLGESS SVVVVESREE PVETTKSLIC ALNYISRDLP LPPHLFAAVS SIYHGSSSSS SSSLPPSVVP PPPGNDFTPY GGDLMGEFED ALLKQRTNIE
0101: SGSRLTELQD NRNKTLIQRR LSELEELPST RGEDLQGKCL LELYGLKLRE LQSKVRTEVS SEFWLRMNCA DVSSQLFDWG MMRLPRLWYG IGDPFATEAD
0201: DQFRKKRDAE RVSRLEEEEK NLIETAKRKF FAEVLNAVRE FQLQIQATQK RRRQRNDGVQ AWHGRQRQRA TRAEKLRLMA LKSDDQEAYM KLVKESKNER
0301: LTTLLEETNK LLTNLGAAVQ RQKDAKLPDG IDPLKDSESD LSELDAPKGE PLQDLLPDQD IDVTESDNND DSNDLLEGQR QYNSAIHSIQ EKVTEQPSLL
0401: KGGELRSYQI EGLQWMVSLF NNNLNGILAD EMGLGKTIQT ISLIAYLLEN KGVPGPYLIV APKAVLPNWV NEFALWVPSI AAYLYDGRLE ERKAIREKIA
0501: GEGKFNVLIT HYDLIMRDKA FLKKIDWHYM IVDEGHRLKN HESALAKTLL TGYRIKRRLL LTGTPIQNSL QELWSLLNFL LPHIFNSVQN FEEWFNAPFA
0601: DRANVSLTDE EELLVIHRLH HVIRPFILRR KKDEVEKFLP GKTQVILKCD MSAWQKVYYK QVTDMGRVGL QTGSGKSKSL QNLTMQLRKC CNHPYLFVGG
0701: EYNMWKKPEI VRASGKFELL DRLLPKLRKA GHRILLFSQM TRLIDILEIY LTLNDFKYLR LDGTTKTDQR GLLLKQFNEP DSPYFMFLLS TRAGGLGLNL
0801: QTADTVIIFD SDWNPQMDQQ AEDRAHRIGQ KKEVRVFVLV SVGSVEEVIL ERAKQKMGID AKVIQAGLFN TTSTAQDRRE MLEELMRKGT SSLGNDVPSE
0901: REINRLAARS EDEFWMFERM DEERRMKESY RTRLMQEQEV PEWAYTTQSQ DDKSNNAKYH FGSVTGKRKR KEIVYSDSLS EVQWMKAVES GEDVSAYSLK
1001: QRRAEKASKA KTSTSKRVVE PIQVVSDETS EEEEEEGRGG QEMSGKQRPI FKWSSHKKKR SRYSFTCSSS DSRAQSSNGS RRN
0101: SGSRLTELQD NRNKTLIQRR LSELEELPST RGEDLQGKCL LELYGLKLRE LQSKVRTEVS SEFWLRMNCA DVSSQLFDWG MMRLPRLWYG IGDPFATEAD
0201: DQFRKKRDAE RVSRLEEEEK NLIETAKRKF FAEVLNAVRE FQLQIQATQK RRRQRNDGVQ AWHGRQRQRA TRAEKLRLMA LKSDDQEAYM KLVKESKNER
0301: LTTLLEETNK LLTNLGAAVQ RQKDAKLPDG IDPLKDSESD LSELDAPKGE PLQDLLPDQD IDVTESDNND DSNDLLEGQR QYNSAIHSIQ EKVTEQPSLL
0401: KGGELRSYQI EGLQWMVSLF NNNLNGILAD EMGLGKTIQT ISLIAYLLEN KGVPGPYLIV APKAVLPNWV NEFALWVPSI AAYLYDGRLE ERKAIREKIA
0501: GEGKFNVLIT HYDLIMRDKA FLKKIDWHYM IVDEGHRLKN HESALAKTLL TGYRIKRRLL LTGTPIQNSL QELWSLLNFL LPHIFNSVQN FEEWFNAPFA
0601: DRANVSLTDE EELLVIHRLH HVIRPFILRR KKDEVEKFLP GKTQVILKCD MSAWQKVYYK QVTDMGRVGL QTGSGKSKSL QNLTMQLRKC CNHPYLFVGG
0701: EYNMWKKPEI VRASGKFELL DRLLPKLRKA GHRILLFSQM TRLIDILEIY LTLNDFKYLR LDGTTKTDQR GLLLKQFNEP DSPYFMFLLS TRAGGLGLNL
0801: QTADTVIIFD SDWNPQMDQQ AEDRAHRIGQ KKEVRVFVLV SVGSVEEVIL ERAKQKMGID AKVIQAGLFN TTSTAQDRRE MLEELMRKGT SSLGNDVPSE
0901: REINRLAARS EDEFWMFERM DEERRMKESY RTRLMQEQEV PEWAYTTQSQ DDKSNNAKYH FGSVTGKRKR KEIVYSDSLS EVQWMKAVES GEDVSAYSLK
1001: QRRAEKASKA KTSTSKRVVE PIQVVSDETS EEEEEEGRGG QEMSGKQRPI FKWSSHKKKR SRYSFTCSSS DSRAQSSNGS RRN
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
Arabidopsis Description
CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.