CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045109_P008	Maize	cytosol	94.18	93.48
TraesCS7B01G050100.3	Wheat	nucleus	78.93	77.12
TraesCS7A01G147100.2	Wheat	nucleus	78.85	76.82
TraesCS7D01G148900.4	Wheat	nucleus	77.42	72.95
Solyc08g029120.1.1	Tomato	nucleus	34.44	64.59
GSMUA_Achr4P21270_001	Banana	cytosol	61.56	59.1
KRH05279	Soybean	nucleus	19.94	58.28
CDY56279	Canola	cytosol	56.72	55.92
Bra007814.1-P	Field mustard	nucleus	56.87	55.16
CDX76767	Canola	cytosol, nucleus, plastid	56.19	54.07
KRH61691	Soybean	nucleus	58.69	53.88
VIT_04s0008g05880.t01	Wine grape	nucleus	59.89	53.87
AT2G25170.3	Thale cress	endoplasmic reticulum	56.57	53.12
KRH52357	Soybean	nucleus	57.7	53.06
CDX75208	Canola	cytosol	46.6	51.59
Solyc06g065730.2.1	Tomato	nucleus	55.36	51.01
CDX68802	Canola	cytosol	46.75	50.99
Bra011311.1-P	Field mustard	nucleus	46.75	50.99
AT4G31900.1	Thale cress	nucleus	43.96	48.42
EER97913	Sorghum	cytosol	16.84	28.66
EER93549	Sorghum	cytosol	16.84	26.67
KXG32501	Sorghum	nucleus	21.0	25.11
OQU93492	Sorghum	cytosol	16.99	24.81
KXG33813	Sorghum	nucleus	20.47	23.52
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.18	22.54
KXG26914	Sorghum	nucleus	14.27	19.46
KXG36860	Sorghum	nucleus	24.32	18.65
OQU92590	Sorghum	nucleus	17.6	16.58
KXG36264	Sorghum	nucleus	26.43	15.74
OQU85588	Sorghum	nucleus	20.24	13.22
OQU84199	Sorghum	nucleus	18.2	11.36
OQU76185	Sorghum	nucleus	20.32	6.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.30.40.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
UniProt:A0A194YHQ5	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	ncoils:Coil	InterPro:DUF1086
InterPro:DUF1087	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR013083	InterPro:IPR014001	InterPro:IPR019787	InterPro:IPR038718
EnsemblPlants:KXG19483	ProteinID:KXG19483	ProteinID:KXG19483.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF00385	PFAM:PF06461	PFAM:PF06465	ScanProsite:PS01359	PFscan:PS50013	PFscan:PS50016
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	SMART:SM00249	SMART:SM00298
SMART:SM00487	SMART:SM00490	SMART:SM01146	SMART:SM01147	InterPro:SNF2-like_sf	InterPro:SNF2_N
EnsemblPlantsGene:SORBI_3010G065300	SUPFAM:SSF52540	SUPFAM:SSF54160	UniParc:UPI0007F1D416	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:5171574..5187968

Molecular Weight (calculated)

152339.0 Da

IEP (calculated)

5.787

GRAVY (calculated)

-0.684

Length

1324 amino acids

Sequence
(BLAST)

0001: MSSLVERLRV RSERRPRYAL DESDDDLPLR AVAGKGKDRQ NDAPAERIER EDAKEEACQR CGKSDNLVSC STCTYAFHRK CLVPCLNITS DKWSCPECIS
0101: PLTEMERILD IEVLEAPQED SSSTEPRSKK AERYLIKWKG LSYIHCSWVS EKEYSEAANI HPRLRTRLNN FRRQKEAMKK EAERSGEDIV AIRPEWTTVD
0201: RILSSRKNSG GEREYYVKWN ELTYEECTWE NESDISAFQP EIERFNEIQS RRKKSGDKAK ATREPRQFKE SPTFLSCGTL HPYQLEGLNF LRYSWFHNKR
0301: VILGDEMGLG KTIQSIAFLA SLFEDKFGPH LVVAPLSTLR NWEREFATWA PQMNVVMYFG AAASRDIIRK HEFYYPKEKL KKLKKKKSSP SNEEKKQSRI
0401: RFDVLLTSYE MINMDSNVLK NIEWECLIVD EGHRLKNKDS KLFGQLKDYN TKHRVLLTGT PVQNNLDELF MLMHFLEGES FGSITDLQEE FKDINQDKQI
0501: EKLHGMLKPH LLRRFKKDVM KELPPKKELI LRVELTSKQK EYYKAILTKN YEVLARRNGG HTSLINVVME LRKLCCHGFM IDEPDFEPAN PEEGLRRLLD
0601: SSGKMQLLDK MMVKLKEQGH RVLIYSQFQH MLDLLEDYLS YRKWSYERID GKISGAERQI RIDRFNAKNS TRFCFLLSTR AGGLGINLAT ADTVIIYDSD
0701: WNPHADLQAM ARAHRLGQTS KVMIYRLVSR GTIEERMMQL TKKKILLEHL VVGRLTKASN VNQEELDDII RYGSKELFDD ENDESRQIHY DEAAIERLLD
0801: RDQVDGDESV EDEEEDEFLK GFKVANFEYI DEAKAQAERE EEARRKAAAE AENSERLNYW DELLKGRYDV QKVEEHTAMG KGKRSRKQMA AADEEDIDLS
0901: TEDEDYSLED DVSDNDTTLQ GNISGKRGQY SRRKSRNVDS IPLMEGEGRT LRVLGFNHAQ RAMFLQTLNR FGFQNYDWKE YLPRLKGKSV EEIQRYAELV
1001: MTHLVEDIND SENFSDGVPK EMMRVDDVLV RIANITLIEE KVSATGPGKI TSIFPNYLLY EFQGLSGGRI WKAEHDLLLL RGILKHGYAR WQYISDDREN
1101: GLFEAARREL NLPSANEIIQ SNTEANGNLE GAQEVQVNST SMSHYKEIQR KIVEFLRKRY HLLERALNLE YAVIKNKIPV PDDITEQGVP AGHVPLLPDI
1201: SELLRELPNL EPISTNEVAP EGTAGQSEVP HLYNKMCGVL EESGGSAISS FFGDKSASSS LANSLHQFEI VCENVIEALR PQQNGTASAI KEEVVDPATK
1301: AAAAPQQDSN GQSSTAKADM EIDG

Best Arabidopsis Sequence Match ( AT2G25170.2 )
(BLAST)

0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D

Arabidopsis Description

PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.