Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0881000-00 | Rice | nucleus | 62.15 | 65.03 |
| TraesCS3B01G442200.1 | Wheat | nucleus | 63.28 | 63.34 |
| TraesCS3A01G408500.1 | Wheat | nucleus | 60.16 | 60.26 |
| TraesCS3D01G403600.1 | Wheat | nucleus | 63.63 | 59.69 |
| EER97913 | Sorghum | cytosol | 19.36 | 28.66 |
| EER93549 | Sorghum | cytosol | 19.27 | 26.55 |
| KXG32501 | Sorghum | nucleus | 21.88 | 22.76 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.96 | 22.45 |
| OQU93492 | Sorghum | cytosol | 17.01 | 21.61 |
| KXG26914 | Sorghum | nucleus | 17.97 | 21.32 |
| KXG19483 | Sorghum | cytosol | 23.52 | 20.47 |
| OQU92590 | Sorghum | nucleus | 19.97 | 16.37 |
| KXG36860 | Sorghum | nucleus | 23.18 | 15.46 |
| OQU84199 | Sorghum | nucleus | 21.35 | 11.6 |
| KXG36264 | Sorghum | nucleus | 22.22 | 11.51 |
| OQU85588 | Sorghum | nucleus | 20.23 | 11.49 |
| OQU76185 | Sorghum | nucleus | 24.13 | 6.87 |
Protein Annotations
| Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:8061015 |
| UniProt:A0A1B6Q7B1 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0046872 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 |
| InterPro:IPR001650 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR038718 | EnsemblPlants:KXG33813 | ProteinID:KXG33813 |
| ProteinID:KXG33813.2 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | ScanProsite:PS00690 | ScanProsite:PS01359 |
| PFscan:PS50013 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF855 | SMART:SM00249 |
| SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | EnsemblPlantsGene:SORBI_3003G377300 |
| SUPFAM:SSF52540 | SUPFAM:SSF54160 | unigene:Sbi.19771 | UniParc:UPI0009DC8B91 | RefSeq:XP_002458862.1 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:69151069..69162540
Molecular Weight (calculated)
130206.0 Da
IEP (calculated)
6.216
GRAVY (calculated)
-0.503
Length
1152 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMLIDKIASA DGTTADVLEA SPHDANDYAD GGVPTPTRNL RRLRKHTVES KAAAAKEHAI DVAAEVKESE SEDGQKLGQR RRSKRILGKQ TRIQDMDVAD
0101: FKEDIFDDSR SSSEDEERKF VPKRSKRIQR KYISEYASGD LSEDKDACWS SSNDECERLA IRRRSKRKLG TRLSTNDDDD DNDFVNYHGK VAPCRRMSKR
0201: LKEKQKVVPI PDESHIEASS SSLSASSSSD DELLCNSVKS STRTGGPICL ICKSGTASSH IIRCQNSNCS VSFHTFCQDP PLQDATTTFE CYLCKMGVSL
0301: ANETEEILVK RIQRYVGHRM LLIQESDFQY QVLVKWHSLS HHHDCWVPLE WLQVFDCIRV RSFLKKSILL KEVYSEDQRK PEWLEVDRAI ACRRKCDPDG
0401: TCDLLTSFQD NKNFEEYEVL VKWKGLDYCE ATWESCCTEG VQAALSMLVE RHQKTLKKPN HVSPLFLDSV ISKEVHNGAL YDYQLQGLQW IFNNFKTRRN
0501: VILADEMGLG KTVQVICFLN HVIKENLTTS PALILAPKSI LLQWEKEFGR WGSNLNVIVY QGDKDSRKCL QAHEMYSSEG KILFDVLVTS YDFVQIDKTF
0601: LQKIKWSAIV IDEAHRMKKL DCNLATCLKR YSSEFRLLLT GTPLQNNMLE LFSLLHYIDP DEFTDPKADD LFTPIESENE LTMEEKIARI HDILKPRMLR
0701: RMKSDVLTDS MPTKKWVEVP CALTDTQREL YINILEKNYS KLNGAIKSGK KLALNNILMQ LRKCCNHPYL FQGLNTEQQP EDDFLSLVAV SGKLQLLQKL
0801: LPRLKERGNR VLIFSQMTMM LDILEGFLFY MGFKYARIDG QTSLSARQES IKEYNRAESE IFIFLMSTRA GGLGVDLPGA DRVIIYDPDF NPFMDLQAQA
0901: RAHRIGQTRP VVVYQLITKC SVEEKILQKS KKKLAVENML MNSSNKKPNA DELQSILLHG AKTIIDRKKI SATSIHYDDE AIKDLLNLDP SSEEKCSKED
1001: NGYLGSIVSF AHGMEDEEPG SPKVEDLKVL KPATPKVDLG RGKRQRRVVN YNDAFENSDS DDMYVPEGSS SSSSSDDDSD NDNYEADSMI SAPVAPASEA
1101: LNMIPAIGAP GAIHGLEAPK ACSNNSSSSS YDGDKPVSAT LVLGPEGGSQ EP
0101: FKEDIFDDSR SSSEDEERKF VPKRSKRIQR KYISEYASGD LSEDKDACWS SSNDECERLA IRRRSKRKLG TRLSTNDDDD DNDFVNYHGK VAPCRRMSKR
0201: LKEKQKVVPI PDESHIEASS SSLSASSSSD DELLCNSVKS STRTGGPICL ICKSGTASSH IIRCQNSNCS VSFHTFCQDP PLQDATTTFE CYLCKMGVSL
0301: ANETEEILVK RIQRYVGHRM LLIQESDFQY QVLVKWHSLS HHHDCWVPLE WLQVFDCIRV RSFLKKSILL KEVYSEDQRK PEWLEVDRAI ACRRKCDPDG
0401: TCDLLTSFQD NKNFEEYEVL VKWKGLDYCE ATWESCCTEG VQAALSMLVE RHQKTLKKPN HVSPLFLDSV ISKEVHNGAL YDYQLQGLQW IFNNFKTRRN
0501: VILADEMGLG KTVQVICFLN HVIKENLTTS PALILAPKSI LLQWEKEFGR WGSNLNVIVY QGDKDSRKCL QAHEMYSSEG KILFDVLVTS YDFVQIDKTF
0601: LQKIKWSAIV IDEAHRMKKL DCNLATCLKR YSSEFRLLLT GTPLQNNMLE LFSLLHYIDP DEFTDPKADD LFTPIESENE LTMEEKIARI HDILKPRMLR
0701: RMKSDVLTDS MPTKKWVEVP CALTDTQREL YINILEKNYS KLNGAIKSGK KLALNNILMQ LRKCCNHPYL FQGLNTEQQP EDDFLSLVAV SGKLQLLQKL
0801: LPRLKERGNR VLIFSQMTMM LDILEGFLFY MGFKYARIDG QTSLSARQES IKEYNRAESE IFIFLMSTRA GGLGVDLPGA DRVIIYDPDF NPFMDLQAQA
0901: RAHRIGQTRP VVVYQLITKC SVEEKILQKS KKKLAVENML MNSSNKKPNA DELQSILLHG AKTIIDRKKI SATSIHYDDE AIKDLLNLDP SSEEKCSKED
1001: NGYLGSIVSF AHGMEDEEPG SPKVEDLKVL KPATPKVDLG RGKRQRRVVN YNDAFENSDS DDMYVPEGSS SSSSSDDDSD NDNYEADSMI SAPVAPASEA
1101: LNMIPAIGAP GAIHGLEAPK ACSNNSSSSS YDGDKPVSAT LVLGPEGGSQ EP
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.