Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G442200.1 | Wheat | nucleus | 85.75 | 91.49 |
| Os01t0881000-00 | Rice | nucleus | 61.73 | 68.85 |
| KXG33813 | Sorghum | nucleus | 59.69 | 63.63 |
| TraesCS7D01G069700.1 | Wheat | cytosol | 17.18 | 27.09 |
| TraesCS2D01G365000.1 | Wheat | cytosol | 17.83 | 26.67 |
| TraesCS4D01G053600.2 | Wheat | cytosol | 17.43 | 25.63 |
| TraesCS1D01G099600.1 | Wheat | nucleus | 20.77 | 23.04 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 20.44 | 22.08 |
| TraesCS2D01G400400.1 | Wheat | cytosol | 15.72 | 21.96 |
| TraesCS4D01G364600.1 | Wheat | cytosol, mitochondrion | 15.15 | 21.09 |
| TraesCS3D01G068900.1 | Wheat | nucleus | 18.81 | 20.61 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 22.15 | 19.36 |
| TraesCS4D01G159900.1 | Wheat | nucleus | 18.81 | 15.46 |
| TraesCS2D01G130900.1 | Wheat | nucleus | 21.58 | 15.34 |
| TraesCS2D01G234200.1 | Wheat | nucleus | 21.58 | 11.79 |
| TraesCS6D01G039800.1 | Wheat | nucleus, plastid | 20.2 | 11.21 |
| TraesCS7D01G531100.1 | Wheat | nucleus | 17.43 | 9.86 |
| TraesCS7D01G206700.2 | Wheat | nucleus | 21.42 | 7.81 |
Protein Annotations
| Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR014001 |
| InterPro:IPR019787 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | ScanProsite:PS00690 |
| ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF855 | SMART:SM00249 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | SUPFAM:SSF54160 | EnsemblPlantsGene:TraesCS3D01G403600 | EnsemblPlants:TraesCS3D01G403600.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00024 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:517536230..517546915
Molecular Weight (calculated)
138422.0 Da
IEP (calculated)
7.267
GRAVY (calculated)
-0.540
Length
1228 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRGGRRGRGR VRRGGGAAAA RPPRGERAAG VQVIELSDDD VKLATQTKPS KGEIAEGCAA DDFKALPCDS TMEVSTKHLG RLRKRTAATG AATSELHEDE
0101: LKVADVKLSN DEVGGQMLPP CRSSKRLCGQ QIGKQDSVGR ESEDGGQMLH PCRRSKRLQR KLAAKQELSS RESQHDVFVN SEDESKTFIQ QRRPNCLRKR
0201: FISEYYSGEL AEDKHTSRSS SDYDYDHLPP QQRSKRLRHR MRTRYDAYDD DSDSDSVDNH RKTIPCRRMS KRLQEKQKTD HVSDESCTEA SLCMLSASSS
0301: TGSDDELLRS TVKPCKSTSS GPICSICESG AGSCLLIQCQ NSSCSRSFHT FCLSPPMQDT RGTLECPLCK INEASLAKGM EVYASKKIQR LVGCRRVILQ
0401: ESDFQYQILV KWQLLSHHHD CWVPLDWLLV FDRLRAQSYI RKNTLPKEVY MDDQRKPEWF EVDRAIACRR KFDLGLCDIL ASYKDNEDFE GYEFLVKWKG
0501: LDYCDAKSYS TEGVKSAVSM LVKRHQNTLR RVDCVSPMNI EGMVSENIHN DALYDYQLQG LKWMFDNFKS KRSVILADEM GLGKTVQVVS FLSHIIKGSF
0601: TTSPALVLAP KSILLQWKKE FDRWAHDLNI VVYQGDKDSR KCIQAHEMYS SERKTLFDAL VTSYEIVQID KAVLQKIKWS TIVIDEAHRL KKLDCNLASC
0701: LKKYSSEFRL LLTGTPLQNN ILELFSLLHY IDPDEFSDPK ADALFSPIES ELDLTIDEKI ARIHDILKPR MLRRMKSDVL KDSMPTKKWV EVPCALADSQ
0801: RDLYINILEK NYSKLNSAIQ YGRKLSLNNV LMELRKCFNK RFDKDLCEYL FPGLEVKQKA GEDVFQSLVS ASGKLQLLHK LLPKLKERGD RVLIFSQMTK
0901: MLDILEDFLS FLGYKYARID GQTALSARQE SIKEYNNTES ETFIFLMSTR AGGLGIDLPG ANRVIIYDPD FNPFMDLQAQ SRAHRIGQTR PVVVYQLITK
1001: CSVEEKILQK SKQKLAIENM LMNSSDSKKP RVDELQSILL HGAKTIVDKK KINAVSIHYD DEAIDNLLKL DPSSGEMCTS DDNGYLGSIV SFAHGAEDVV
1101: PPSPNVEDLK VFKPATPKVD LGRGRRPRNV VKYFEEVDNE DSDDMYAPEP SSESSSSSSD DETEQEIPEV ASARTEVAVK TEAATVVKLE VAPSPGSALT
1201: SSDSGSSGSS SSDDEKEEVK PVVAGVNP
0101: LKVADVKLSN DEVGGQMLPP CRSSKRLCGQ QIGKQDSVGR ESEDGGQMLH PCRRSKRLQR KLAAKQELSS RESQHDVFVN SEDESKTFIQ QRRPNCLRKR
0201: FISEYYSGEL AEDKHTSRSS SDYDYDHLPP QQRSKRLRHR MRTRYDAYDD DSDSDSVDNH RKTIPCRRMS KRLQEKQKTD HVSDESCTEA SLCMLSASSS
0301: TGSDDELLRS TVKPCKSTSS GPICSICESG AGSCLLIQCQ NSSCSRSFHT FCLSPPMQDT RGTLECPLCK INEASLAKGM EVYASKKIQR LVGCRRVILQ
0401: ESDFQYQILV KWQLLSHHHD CWVPLDWLLV FDRLRAQSYI RKNTLPKEVY MDDQRKPEWF EVDRAIACRR KFDLGLCDIL ASYKDNEDFE GYEFLVKWKG
0501: LDYCDAKSYS TEGVKSAVSM LVKRHQNTLR RVDCVSPMNI EGMVSENIHN DALYDYQLQG LKWMFDNFKS KRSVILADEM GLGKTVQVVS FLSHIIKGSF
0601: TTSPALVLAP KSILLQWKKE FDRWAHDLNI VVYQGDKDSR KCIQAHEMYS SERKTLFDAL VTSYEIVQID KAVLQKIKWS TIVIDEAHRL KKLDCNLASC
0701: LKKYSSEFRL LLTGTPLQNN ILELFSLLHY IDPDEFSDPK ADALFSPIES ELDLTIDEKI ARIHDILKPR MLRRMKSDVL KDSMPTKKWV EVPCALADSQ
0801: RDLYINILEK NYSKLNSAIQ YGRKLSLNNV LMELRKCFNK RFDKDLCEYL FPGLEVKQKA GEDVFQSLVS ASGKLQLLHK LLPKLKERGD RVLIFSQMTK
0901: MLDILEDFLS FLGYKYARID GQTALSARQE SIKEYNNTES ETFIFLMSTR AGGLGIDLPG ANRVIIYDPD FNPFMDLQAQ SRAHRIGQTR PVVVYQLITK
1001: CSVEEKILQK SKQKLAIENM LMNSSDSKKP RVDELQSILL HGAKTIVDKK KINAVSIHYD DEAIDNLLKL DPSSGEMCTS DDNGYLGSIV SFAHGAEDVV
1101: PPSPNVEDLK VFKPATPKVD LGRGRRPRNV VKYFEEVDNE DSDDMYAPEP SSESSSSSSD DETEQEIPEV ASARTEVAVK TEAATVVKLE VAPSPGSALT
1201: SSDSGSSGSS SSDDEKEEVK PVVAGVNP
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.