Factsheet for TraesCS4D01G053600.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G261000.1	Wheat	cytosol	98.92	98.57
TraesCS4B01G053600.1	Wheat	cytosol, plastid	97.96	90.29
TraesCS7D01G069700.1	Wheat	cytosol	79.4	85.11
TraesCS2D01G365000.1	Wheat	cytosol	76.89	78.2
EER97913	Sorghum	cytosol	71.5	76.74
Os03t0722400-01	Rice	cytosol	76.53	75.27
Zm00001d007978_P003	Maize	cytosol	71.02	75.25
EER93549	Sorghum	cytosol	75.09	75.0
Os09t0442700-01	Rice	cytosol	74.97	74.08
Zm00001d033827_P006	Maize	cytosol	74.85	73.7
PGSC0003DMT400040011	Potato	cytosol	61.92	68.57
GSMUA_Achr3P26090_001	Banana	cytosol	62.16	68.38
VIT_04s0023g01610.t01	Wine grape	cytosol	61.8	67.98
PGSC0003DMT400038561	Potato	cytosol	60.72	66.71
Solyc02g062780.2.1	Tomato	cytosol	60.96	66.02
AT5G66750.1	Thale cress	cytosol	59.4	64.92
Bra012099.1-P	Field mustard	cytosol	59.76	64.72
CDY53848	Canola	cytosol	59.64	64.59
CDY30755	Canola	cytosol	59.76	64.47
KRH76800	Soybean	cytosol	58.8	64.44
CDX81370	Canola	cytosol	58.92	64.23
KRH28662	Soybean	cytosol	58.68	64.22
CDY57125	Canola	cytosol	58.68	63.97
Solyc02g085390.2.1	Tomato	cytosol	60.72	62.52
Bra037150.1-P	Field mustard	nucleus	58.68	40.87
TraesCS1D01G099600.1	Wheat	nucleus	32.22	24.3
TraesCS2D01G400400.1	Wheat	cytosol	25.15	23.89
TraesCS3D01G068900.1	Wheat	nucleus	31.86	23.73
TraesCS1D01G089200.2	Wheat	nucleus	30.66	22.52
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	22.04	20.86
TraesCS3D01G403600.1	Wheat	nucleus	25.63	17.43
TraesCS7D01G148900.4	Wheat	nucleus	26.11	15.52
TraesCS4D01G159900.1	Wheat	nucleus	27.07	15.13
TraesCS2D01G130900.1	Wheat	nucleus	29.22	14.12
TraesCS6D01G039800.1	Wheat	nucleus, plastid	28.74	10.85
TraesCS7D01G531100.1	Wheat	nucleus	27.9	10.73
TraesCS2D01G234200.1	Wheat	nucleus	26.47	9.84
TraesCS7D01G206700.2	Wheat	nucleus	29.94	7.43

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G053600	EnsemblPlants:TraesCS4D01G053600.2	TIGR:cd00046	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr4D:+:29798677..29804510

Molecular Weight (calculated)

93715.4 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.444

Length

835 amino acids

Sequence
(BLAST)

001: MTPRPHRESA TSAPVAAAAE MVVAVANGAK REAAAAANTT AAADADADSP ISVLEEEKMA GSKDGKAGEL KANGGEAHPI AEALKAEEQL LNSVKDETSV
101: EPLDATSPLP IDLVAKNGDT SLITEVMTKE EEEMYQARIK LEEEEEARKR EEAARQAFDP KAKFSKLDEL LTQTQLYSEF LLEKMEQITD VKPTAVEIKD
201: EEEPVEEQKK GRGRKRKAAN KPQYNDKKAK TAVAAMLSRS REDRSADDGT LTEEEKWERE QANLVPLLTG GKLKSYQIKG VKWLISLWQN GLNGILADQM
301: GLGKTIQTIA FLAHLKGNGL HGPYMVIAPL STLSNWLNEL TRFAPSINGL IYHGDKVART ELRRKHMPKT VGPDFPIIIT SYEMAMFDAK FLANYKWKYV
401: VVDEGHRLKN TKCKLLRELR RIPMDNKLLL TGTPLQNNLA ELWSLLNFIL PDIFSSHEEF ESWFDFSGKA DEELEEETDE KKRVLVVSKL HAILRPFLLR
501: RMKEDVEHML PRKKEIIIYA NMTEHQKQIQ NHLIEQTFDD YLHESADIVL RRPGIKTKLN NLLIQLRKNC GHPDLFHSAF DSNSLYPPVD KLLEQCGKFQ
601: LLDRLLNALI KRNHKVLIFS QWTKILDILD YYLSEKGLKV CRIDGNVKLE DRRNQIAAFN DLNSGMNVFI LSTRAGGLGI NLTSADTCIL YDSDWNPQMD
701: LQAMDRCHRI GQTQPVHVYR LATSNSVEGR IIKKAFGKLK LEHVVIGKGQ FQQDAAKPNA LDEGELLALL RDEQAEEDRM IQTDISDEDL LKVMDRSDLT
801: GARAAADAAP HFPLKGPGWE VVVAAGGGML SALTS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.