Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g062780.2.1 | Tomato | cytosol | 96.15 | 94.03 |
| PGSC0003DMT400038561 | Potato | cytosol | 83.55 | 82.89 |
| VIT_04s0023g01610.t01 | Wine grape | cytosol | 78.65 | 78.13 |
| KRH76800 | Soybean | cytosol | 74.14 | 73.36 |
| KRH28662 | Soybean | cytosol | 73.74 | 72.87 |
| CDX81370 | Canola | cytosol | 72.55 | 71.41 |
| CDY57125 | Canola | cytosol | 72.55 | 71.41 |
| Bra012099.1-P | Field mustard | cytosol | 72.81 | 71.21 |
| CDY53848 | Canola | cytosol | 72.81 | 71.21 |
| AT5G66750.1 | Thale cress | cytosol | 72.15 | 71.2 |
| CDY30755 | Canola | cytosol | 72.94 | 71.06 |
| GSMUA_Achr3P26090_001 | Banana | cytosol | 69.5 | 69.04 |
| TraesCS7A01G074600.1 | Wheat | cytosol | 64.72 | 64.98 |
| TraesCS7D01G069700.1 | Wheat | cytosol | 66.58 | 64.44 |
| Zm00001d007978_P003 | Maize | cytosol | 67.24 | 64.34 |
| EER97913 | Sorghum | cytosol | 66.31 | 64.27 |
| TraesCS2A01G368200.1 | Wheat | cytosol | 65.38 | 63.29 |
| EER93549 | Sorghum | cytosol | 68.7 | 61.96 |
| TraesCS4D01G053600.2 | Wheat | cytosol | 68.57 | 61.92 |
| TraesCS4A01G261000.1 | Wheat | cytosol | 68.7 | 61.81 |
| Os03t0722400-01 | Rice | cytosol | 68.97 | 61.25 |
| TraesCS2D01G365000.1 | Wheat | cytosol | 66.45 | 61.02 |
| Os09t0442700-01 | Rice | cytosol | 68.3 | 60.95 |
| TraesCS2B01G385300.1 | Wheat | cytosol | 66.18 | 60.93 |
| Zm00001d033827_P006 | Maize | cytosol | 68.44 | 60.85 |
| TraesCS4A01G372200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 66.71 | 57.68 |
| TraesCS4B01G053600.1 | Wheat | cytosol, plastid | 68.3 | 56.84 |
| Bra037150.1-P | Field mustard | nucleus | 72.55 | 45.62 |
| PGSC0003DMT400066819 | Potato | cytosol | 15.52 | 31.54 |
| PGSC0003DMT400079102 | Potato | nucleus | 36.34 | 25.9 |
| PGSC0003DMT400058376 | Potato | nucleus | 36.47 | 25.85 |
| PGSC0003DMT400011842 | Potato | nucleus | 5.31 | 5.79 |
| PGSC0003DMT400000170 | Potato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:102587045 | MapMan:12.5.2.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M1B953 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| EnsemblPlantsGene:PGSC0003DMG400015477 | PGSC:PGSC0003DMG400015477 | EnsemblPlants:PGSC0003DMT400040011 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF812 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI00029629E8 | RefSeq:XP_006346947.1 | RefSeq:XP_006346948.1 | SEG:seg | : | : |
Description
ISWI chromatin remodeling complex ATPase ISW1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015477]
Coordinates
chr2:-:21168038..21176603
Molecular Weight (calculated)
85980.4 Da
IEP (calculated)
6.276
GRAVY (calculated)
-0.469
Length
754 amino acids
Sequence
(BLAST)
(BLAST)
001: MVANADTGVK DVVTKADSPV SVLAEEDTCK EKLAVKLEDE VFLDAKNGDV SLLSELMKKE EENLIKARVK EEEVNDPKEA PNLNDLQFSK LDELLTQTQL
101: YSEFLLEKMD NITVAGVEDE EKGSEDKKRG RGRKRKAETS YNNKKAKRAV AAMLSRSKEG GSVEDSTLTE EERADKEQAE LVPLLTGGKL KSYQLKGVKW
201: LISLWQNGLN GILADQMGLG KTIQTISFLA HLKGNGLDGP YLVIAPLSTL SNWMNEIERF VPSINAIIYH GDKKQRDEIR RKHMPRTIGP KFPIVITSYE
301: IAMFDAKKFL RHYTWKYLVV DEGHRLKNSK CKLFKELKLL PIENKLLLTG TPLQNNLAEL WSLLNFILPD IFSSLEEFES WFDLSGRCGN EAQKEEMEEK
401: RRTQVVAKLH AILRPFLLRR LKVDVEQMLP RKKEIILYAT MTEHQKKFQD HLINQTLEGY LTENVSIGNH FRGKLTNLMI QLRKNCNHPD LLESAFDGSY
501: HYPPIEQIVG QCGKFRLLER LLSELFARKH KVLIFSQWTK VLDIMDYYFS ERGFDVCKID GRVKLDERKR QIEEFNDINS ECRVFLLSTR AGGLGINLTA
601: ADTCILYDSD WNPQMDLQAM DRCHRIGQTK PVHVYRLATA LSVEGRMLKR AFSKLKLEHV VIGKGQFKQE RSTTDTVEEE DLLALLRDDD NEEDRLTQTD
701: ISDEDLQRVL DRSDLVVGPA SEDESKVNVA PLKGPGWDVV VPTASGGMLS TLNS
101: YSEFLLEKMD NITVAGVEDE EKGSEDKKRG RGRKRKAETS YNNKKAKRAV AAMLSRSKEG GSVEDSTLTE EERADKEQAE LVPLLTGGKL KSYQLKGVKW
201: LISLWQNGLN GILADQMGLG KTIQTISFLA HLKGNGLDGP YLVIAPLSTL SNWMNEIERF VPSINAIIYH GDKKQRDEIR RKHMPRTIGP KFPIVITSYE
301: IAMFDAKKFL RHYTWKYLVV DEGHRLKNSK CKLFKELKLL PIENKLLLTG TPLQNNLAEL WSLLNFILPD IFSSLEEFES WFDLSGRCGN EAQKEEMEEK
401: RRTQVVAKLH AILRPFLLRR LKVDVEQMLP RKKEIILYAT MTEHQKKFQD HLINQTLEGY LTENVSIGNH FRGKLTNLMI QLRKNCNHPD LLESAFDGSY
501: HYPPIEQIVG QCGKFRLLER LLSELFARKH KVLIFSQWTK VLDIMDYYFS ERGFDVCKID GRVKLDERKR QIEEFNDINS ECRVFLLSTR AGGLGINLTA
601: ADTCILYDSD WNPQMDLQAM DRCHRIGQTK PVHVYRLATA LSVEGRMLKR AFSKLKLEHV VIGKGQFKQE RSTTDTVEEE DLLALLRDDD NEEDRLTQTD
701: ISDEDLQRVL DRSDLVVGPA SEDESKVNVA PLKGPGWDVV VPTASGGMLS TLNS
001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS
Arabidopsis Description
DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.