Factsheet for Bra037150.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57125	Canola	cytosol	63.14	98.83
Bra012099.1-P	Field mustard	cytosol	56.05	87.16
AT5G66750.1	Thale cress	cytosol	55.13	86.52
VIT_04s0023g01610.t01	Wine grape	cytosol	46.21	72.99
PGSC0003DMT400040011	Potato	cytosol	45.62	72.55
PGSC0003DMT400038561	Potato	cytosol	44.45	70.13
Solyc02g062780.2.1	Tomato	cytosol	44.95	69.91
KRH76800	Soybean	cytosol	44.2	69.55
KRH28662	Soybean	cytosol	43.7	68.68
GSMUA_Achr3P26090_001	Banana	cytosol	42.45	67.06
Solyc02g085390.2.1	Tomato	cytosol	45.12	66.71
TraesCS7A01G074600.1	Wheat	cytosol	39.45	62.98
TraesCS7D01G069700.1	Wheat	cytosol	40.28	62.0
EER97913	Sorghum	cytosol	40.12	61.83
Zm00001d007978_P003	Maize	cytosol	40.28	61.29
TraesCS2A01G368200.1	Wheat	cytosol	38.7	59.56
TraesCS4D01G053600.2	Wheat	cytosol	40.87	58.68
TraesCS4A01G261000.1	Wheat	cytosol	40.62	58.11
EER93549	Sorghum	cytosol	40.45	58.01
Os09t0442700-01	Rice	cytosol	40.78	57.87
Os03t0722400-01	Rice	cytosol	40.78	57.6
TraesCS2D01G365000.1	Wheat	cytosol	39.2	57.25
TraesCS2B01G385300.1	Wheat	cytosol	39.03	57.14
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	41.12	56.54
Zm00001d033827_P006	Maize	cytosol	39.95	56.49
TraesCS4B01G053600.1	Wheat	cytosol, plastid	41.2	54.53
Bra017422.1-P	Field mustard	cytosol	16.43	25.85
Bra040221.1-P	Field mustard	nucleus	22.52	25.74
Bra020751.1-P	Field mustard	nucleus	21.85	24.88
Bra002173.1-P	Field mustard	nucleus	21.6	24.34
Bra023689.1-P	Field mustard	nucleus	21.68	23.61
Bra040237.1-P	Field mustard	nucleus	21.43	23.36
Bra004881.1-P	Field mustard	nucleus	10.34	19.17
Bra011311.1-P	Field mustard	nucleus	17.85	17.63
Bra007814.1-P	Field mustard	nucleus	18.77	16.48
Bra014632.1-P	Field mustard	cytosol	19.02	15.06
Bra037208.1-P	Field mustard	nucleus	20.02	14.23
Bra007318.1-P	Field mustard	nucleus	17.35	13.9
Bra034727.1-P	Field mustard	nucleus	19.68	11.69
Bra039296.1-P	Field mustard	plastid	18.85	10.58
Bra000409.1-P	Field mustard	plastid	18.85	10.45
Bra027574.1-P	Field mustard	nucleus	18.02	9.72
Bra000114.1-P	Field mustard	nucleus	21.02	7.69

Protein Annotations

MapMan:12.5.2.1	MapMan:16.4.1.1.1	Gene3D:3.30.70.330	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra037150
EnsemblPlants:Bra037150.1	EnsemblPlants:Bra037150.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005524	GO:GO:0030619	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR000504	InterPro:IPR001650	InterPro:IPR012677	InterPro:IPR014001	InterPro:IPR038718	UniProt:M4F7T9
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:P-loop_NTPase	PFAM:PF00076	PFAM:PF00176	PFAM:PF00271	PFAM:PF12220
PFscan:PS50102	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI0002541D0D	SEG:seg	InterPro:snRNP70_RRM

Description

AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase

Coordinates

chrA09:+:4244078..4251269

Molecular Weight (calculated)

138033.0 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.975

Length

1199 amino acids

Sequence
(BLAST)

0001: MGDMNDPFMR NQAVQARPKV QNRSNVLQLK LMGQSHPTGL TPNLLKLFEP RPPLEFLPPP EKRKCPPYTG MAQFVSRFAE PGDPEYAPPK PEVETPAQKR
0101: ERIHKSRLEK GVEKAAEDLQ KYDPNNDPNA SGDPYKTLFV ARLNYETSES KIKREFEAYG PIKQVHLVTD QQTNKPKGYA FIEYLNTRDM KAAYKQGDGK
0201: KIDGRRVLVD VERGRTVPNW RPRRLGGGLG TTRVTGEKIA GEEEQQQPSQ ARTSRSEEPK AREDREKSRD RGKEREREVS HERSRERSHE RSRERSRDRP
0301: RESHREDKHH RDRDRGRDRG DRDRESRRDR GDRDRRSRDH DRERSRKRDR DYESGEYEEE GEYERGGSKQ RRGESEEGHG YYEGRSRRSS HYEREEEQGG
0401: DQDRYDDRYG RVEEEEYRYD DLLFKSDGDR SVISNRIVLL LRRWAPVTAS DEKTKKDASA DSSTSVLSDE ENSEETLVGK EILLAKDGDS SLISEAMSQE
0501: EEQLLKLRED EEKAKCAESG EATDLNDTQF TKLDELLTQT QLYSEFLLEK MEDITKNGIE GETQKTEPEK KRGRGRKRKA ATQAASMKAK KAVAAMISRS
0601: KEGHESANSD LTEEERGMKE QSELVPLLTG GKLKSYQLKG VKWLISLWQN GLNGILADQM GLGKTIQTIG FLSHLKGNGL DGPYLVIAPL STLSNWMNEI
0701: ARFTPTINAI IYHGDKKKRD ELRRKHMPKT VGPKFPIVIT SYEVAMNDAR KNLRHYPWKY VVIDEGHRLK NHQCKLLREL KHMKMENKLL LTGTPLQNNL
0801: SELWSLLNFI LPDIFASHDE FESWFDFSEK NKSEASKEEG EEKRRAQVVA KLHNILRPFI LRRMKCDVEL LLPRKKEIII YATMTDHQKN FQDHLVNRTL
0901: EAHLGENAIP GQGWKGKLNN LVIQLRKNCN HPDLLAGQID GSYFYPPIED IVGQCGKFRL LERLLVRLFA NNHKVLVFTQ WTKILDIMDY YFSEKGFEVC
1001: RIDGNVKLDE RRRQIDEFND EKSSCRIFLL STRAGGLGIN LTAADTCILY DSDWNPQMDL QAMDRCHRIG QTKPVHVYRL ATAQSVEGRV LKRAYSKLKL
1101: EHVVIGKGQF HQERAKSSIP LEEEDILALL KDDETAEDKL IQTDISEEDL DRLLDRSDLM ITSPGETEPE AGEAFPVKGP GWEVVLPSSA GGMLSSLNS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.