Factsheet for TraesCS4A01G372200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G074600.1	Wheat	cytosol	83.72	97.2
TraesCS7D01G069700.1	Wheat	cytosol	86.58	96.92
TraesCS4A01G261000.1	Wheat	cytosol	76.49	79.59
TraesCS2A01G368200.1	Wheat	cytosol	69.5	77.79
EER97913	Sorghum	cytosol	67.78	75.96
Zm00001d007978_P003	Maize	cytosol	66.63	73.73
EER93549	Sorghum	cytosol	70.41	73.44
Os03t0722400-01	Rice	cytosol	71.33	73.26
Zm00001d033827_P006	Maize	cytosol	70.41	72.41
Os09t0442700-01	Rice	cytosol	69.95	72.19
GSMUA_Achr3P26090_001	Banana	cytosol	58.49	67.19
VIT_04s0023g01610.t01	Wine grape	cytosol	58.14	66.8
PGSC0003DMT400040011	Potato	cytosol	57.68	66.71
PGSC0003DMT400038561	Potato	cytosol	57.68	66.18
Solyc02g062780.2.1	Tomato	cytosol	56.65	64.07
CDX81370	Canola	cytosol	56.08	63.84
CDY57125	Canola	cytosol	55.96	63.71
Bra012099.1-P	Field mustard	cytosol	56.31	63.68
CDY53848	Canola	cytosol	56.19	63.55
CDY30755	Canola	cytosol	56.19	63.31
AT5G66750.1	Thale cress	cytosol	55.39	63.22
KRH28662	Soybean	cytosol	55.28	63.17
KRH76800	Soybean	cytosol	55.16	63.12
Solyc02g085390.2.1	Tomato	cytosol	58.03	62.39
Bra037150.1-P	Field mustard	nucleus	56.54	41.12
TraesCS1A01G087900.1	Wheat	nucleus	27.87	26.88
TraesCS1A01G091100.1	Wheat	nucleus	30.73	24.23
TraesCS3A01G069900.2	Wheat	nucleus	30.16	23.27
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	22.94	23.02
TraesCS5A01G541400.1	Wheat	cytosol	21.1	20.86
TraesCS3A01G408500.1	Wheat	nucleus	24.43	18.52
TraesCS7A01G147100.2	Wheat	nucleus	24.89	15.97
TraesCS4A01G147000.1	Wheat	nucleus	25.34	14.77
TraesCS2A01G128400.1	Wheat	nucleus	27.75	14.0
TraesCS6A01G034200.2	Wheat	nucleus, plastid	26.83	10.56
TraesCS7A01G544700.1	Wheat	nucleus	26.03	10.53
TraesCS2A01G227900.1	Wheat	nucleus	24.66	9.58
TraesCS7A01G203600.1	Wheat	nucleus	28.21	7.26

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4A01G372200	EnsemblPlants:TraesCS4A01G372200.1	TIGR:cd00046	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr4A:-:647087666..647093572

Molecular Weight (calculated)

98702.1 Da

IEP (calculated)

8.789

GRAVY (calculated)

-0.465

Length

872 amino acids

Sequence
(BLAST)

001: MEGNAADYQS AILILAGGLS YWSFRITFQK KKSFLKCTRC PVPTFKKTYL PPPVRSHSPP PPLSFRLPRR PCPRRLGSLD QRRPHRPSPS SPVKMVVAVA
101: NAAAAAAPTA VTAADADSPA SVLEDEKMPE AKDERNAGDL KREATADQLL NSVREDGDAG LLVTEVMAKE EEELYQARLK AEEEEEARRR EARKAFDPNE
201: RFSKLDELLT KTQLFSEFLL ERMEQITDKA VEVKDEEEPV EEQKKGRGRK RKAKAKQKYN DKKAKTAVAA MLTRSREDRT ADDSTLTEEE RWEKEQANLV
301: PLLTGGKLKS YQIKGIKWLI SLWQNGLNGI LADQMGLGKT IQTIGFLAHL KGNGMDGPYM VIAPLSTLSN WLNELSRFAP SLIGLIYHGD KVARAELRRK
401: FMPKKVGPNF PIIITSFEMA MFDAKLLANY QWKYVVVDEG HRLKNTNCKL LRELRRIPME NKLLLTGTPL QNNLAELWSL LNFILPDIFS SHQEFESWFD
501: FSGKGDGEQQ EETDENKRVL VVSKLHAILR PFLLRRMKED VEHMLPRKKE IIIYANMTEH QKQIQNHLVE RTFDNYLHEN TDIVLRRPGI KTKLNNLLIQ
601: LRKNCGHPDL LDAAFDTSYF YPPVEKLLEQ CGKFQLLDRL LDALLKRNHK VLIFSQWTKV LDILDYYLDT KGLKVCRIDG NVKLEDRRKQ IAEFNDLNSG
701: LNIFILSTRA GGLGINLTSA DTCILYDSDW NPQMDLQAMD RCHRIGQTKP VHVYRLATSN SVEGRIIKRA FGKLKLEHVV IGKGQFQQDA AKPNALDEAE
801: LLALLRDEQG EEDRLIQTDI SDEDLLKVMD RSDLTGPAAA ASAAPLVPLK GPGWEVVLAS KSGGGMLSAL TS

Best Arabidopsis Sequence Match ( AT3G06400.2 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE EGGDPLTTEE VEEKEGLLEE GFSTWSRRDF NTFLRACEKY GRNDIKSIAS EMEGKTEEEV ERYAKVFKER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA IGKKLDRYRN PWLELKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAFRTSSVF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ EFDERERQAR KEKKLAKSAT PSKRPLGRQA SESPSSTKKR KHLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.