Factsheet for GSMUA_Achr3P26090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040011	Potato	cytosol	69.04	69.5
VIT_04s0023g01610.t01	Wine grape	cytosol	69.17	69.17
PGSC0003DMT400038561	Potato	cytosol	67.46	67.37
KRH76800	Soybean	cytosol	67.33	67.06
Solyc02g062780.2.1	Tomato	cytosol	67.72	66.67
CDX81370	Canola	cytosol	67.19	66.58
CDY57125	Canola	cytosol	67.06	66.45
KRH28662	Soybean	cytosol	66.53	66.19
CDY53848	Canola	cytosol	67.06	66.02
AT5G66750.1	Thale cress	cytosol	66.4	65.97
Bra012099.1-P	Field mustard	cytosol	66.93	65.89
TraesCS7A01G074600.1	Wheat	cytosol	64.95	65.65
CDY30755	Canola	cytosol	66.93	65.63
EER97913	Sorghum	cytosol	66.67	65.04
TraesCS7D01G069700.1	Wheat	cytosol	66.4	64.7
Zm00001d007978_P003	Maize	cytosol	66.53	64.09
TraesCS2A01G368200.1	Wheat	cytosol	65.74	64.06
Os03t0722400-01	Rice	cytosol	70.75	63.25
Solyc02g085390.2.1	Tomato	cytosol	67.46	63.13
Os09t0442700-01	Rice	cytosol	70.09	62.96
EER93549	Sorghum	cytosol	68.51	62.2
TraesCS4D01G053600.2	Wheat	cytosol	68.38	62.16
TraesCS2B01G385300.1	Wheat	cytosol	66.8	61.9
TraesCS2D01G365000.1	Wheat	cytosol	66.8	61.75
TraesCS4A01G261000.1	Wheat	cytosol	68.12	61.69
Zm00001d033827_P006	Maize	cytosol	67.85	60.73
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	67.19	58.49
TraesCS4B01G053600.1	Wheat	cytosol, plastid	68.38	57.28
Bra037150.1-P	Field mustard	nucleus	67.06	42.45
GSMUA_AchrUn_...	Banana	cytosol	20.82	32.58
GSMUA_Achr3P23910_001	Banana	nucleus	35.18	24.98
GSMUA_Achr8P09960_001	Banana	nucleus	35.31	24.79
GSMUA_Achr4P25930_001	Banana	cytosol	25.3	23.79
GSMUA_Achr6P20210_001	Banana	nucleus	33.86	17.53
GSMUA_Achr4P21270_001	Banana	cytosol	30.43	16.75
GSMUA_Achr8P06840_001	Banana	nucleus	30.04	16.52
GSMUA_Achr6P02430_001	Banana	cytosol	18.97	15.95
GSMUA_Achr8P00120_001	Banana	nucleus	30.04	15.6
GSMUA_Achr8P29610_001	Banana	nucleus	31.62	14.29
GSMUA_AchrUn_...	Banana	cytosol, nucleus	4.87	11.14
GSMUA_Achr1P24350_001	Banana	nucleus	30.04	10.69
GSMUA_AchrUn_...	Banana	nucleus	28.72	10.16
GSMUA_AchrUn_...	Banana	nucleus, plastid	29.78	10.14
GSMUA_Achr3P26510_001	Banana	nucleus	20.16	9.4
GSMUA_Achr9P11210_001	Banana	nucleus	24.77	9.14
GSMUA_Achr6P29570_001	Banana	nucleus	23.19	8.22

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0000786
GO:GO:0003674	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006344	GO:GO:0006346
GO:GO:0006349	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009294
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538	GO:GO:0032197
GO:GO:0032508	GO:GO:0040029	GO:GO:0044030	GO:GO:0051574	GO:GO:0090241	EnsemblPlantsGene:GSMUA_Achr3G26090_001
EnsemblPlants:GSMUA_Achr3P26090_001	EnsemblPlants:GSMUA_Achr3T26090_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	UniProt:M0SHX5	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0002956ABA	SEG:seg	:	:

Description

SNF2 family N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G26090_001]

Coordinates

chr3:+:26053165..26060225

Molecular Weight (calculated)

86262.8 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.428

Length

759 amino acids

Sequence
(BLAST)

001: MRRMEGEENG DKVDGAADSP TSVLEEESVV AEEVTALPLE FEAKNGDTSL ITDAMEKEEE KLLDARMNEA KVKQEMSRDI DDHELRFSKL DELLTQTQLY
101: SEFLLEKMDD ITFHNNSENT AEVEDEAKGK KTGRGRKRKP ASQYNNRKAK TAVRAMLTRS HEAMAPEDAG LTEEDKAEKE QSELVPLITG GKLKSYQIKG
201: VKWLISLWQN GLNGILADQM GLGKTIQTIG FLAHLKGKGL DGPYMVIAPL STLSNWVNEV SRFVPSMTAI IYHGSKKERL DIRRKHMPKE IGPKFPLIIT
301: SYEVAMNDAK FLAQYKWKYV VVDEGHRLKN SKCILLRELR RLPIENKLLL TGTPLQNNLA ELWSLLNFIL PDIFASNEEF ESWFDFSGRA NSESQLEENE
401: EKRRVQVVTK LHSILRPFLL RRMKENVERM LPRKKEIILY ANMTDHQKHI QDHLDSFVAL TWMSGMKGKL NNLIIQLRKN CNHPDLFESA INGSYFYPPI
501: EQLIGQCGKF QLLDRLLGLL LAQKHKVLIF SQWTKVLDII DYYLSEKGLE VCRIDGRVKL DERKRQCLEV FALSYAIDAF NDLNSNVSIF LLSTRAGGLG
601: INLTAADTCI LYDSDWNPQM DLQAMDRCHR IGQTRPVHVY RLATSHSVEG RIIKRAFGKL KLEHVVIAKG HFQLERMKPN TLEESELLAL LRDEEDPEDK
701: LVQTDITDED LLRVLDRSDL TGPVDGDAAS RNSLPLKGPG WEVVIPTKSG GGVLSSLSS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.