Factsheet for Zm00001d007978_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97913	Sorghum	cytosol	89.34	90.49
TraesCS7A01G074600.1	Wheat	cytosol	72.84	76.43
TraesCS2A01G368200.1	Wheat	cytosol	74.24	75.1
TraesCS7D01G069700.1	Wheat	cytosol	73.35	74.2
Zm00001d033827_P006	Maize	cytosol	79.19	73.58
TraesCS2D01G365000.1	Wheat	cytosol	76.14	73.08
Os03t0722400-01	Rice	cytosol	78.43	72.79
TraesCS2B01G385300.1	Wheat	cytosol	75.63	72.77
Os09t0442700-01	Rice	cytosol	77.92	72.66
TraesCS4D01G053600.2	Wheat	cytosol	75.25	71.02
TraesCS4A01G261000.1	Wheat	cytosol	75.0	70.53
PGSC0003DMT400040011	Potato	cytosol	64.34	67.24
VIT_04s0023g01610.t01	Wine grape	cytosol	64.21	66.67
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	73.73	66.63
GSMUA_Achr3P26090_001	Banana	cytosol	64.09	66.53
PGSC0003DMT400038561	Potato	cytosol	63.58	65.92
TraesCS4B01G053600.1	Wheat	cytosol, plastid	74.87	65.12
Solyc02g062780.2.1	Tomato	cytosol	63.71	65.11
KRH76800	Soybean	cytosol	61.8	63.91
KRH28662	Soybean	cytosol	61.55	63.56
CDX81370	Canola	cytosol	61.42	63.19
CDY57125	Canola	cytosol	61.29	63.05
Bra012099.1-P	Field mustard	cytosol	61.42	62.78
CDY53848	Canola	cytosol	61.42	62.78
AT5G66750.1	Thale cress	cytosol	60.66	62.57
CDY30755	Canola	cytosol	61.42	62.53
Solyc02g085390.2.1	Tomato	cytosol	63.83	62.02
Bra037150.1-P	Field mustard	nucleus	61.29	40.28
Zm00001d040831_P021	Maize	nucleus	32.87	23.12
Zm00001d009312_P028	Maize	nucleus	32.99	23.01
Zm00001d024816_P007	Maize	cytosol	31.73	22.52
Zm00001d006798_P002	Maize	nucleus	31.73	22.4
Zm00001d048552_P005	Maize	cytosol	23.86	20.8
Zm00001d002656_P002	Maize	nucleus	24.62	19.82
Zm00001d045109_P008	Maize	cytosol	28.93	17.09
Zm00001d015595_P001	Maize	cytosol	4.06	16.24
Zm00001d029180_P002	Maize	nucleus	28.05	14.49
Zm00001d022405_P051	Maize	nucleus	31.35	14.33
Zm00001d047471_P002	Maize	nucleus	27.79	13.98
Zm00001d007089_P003	Maize	nucleus	28.43	12.9
Zm00001d051507_P007	Maize	nucleus	28.81	11.01
Zm00001d014977_P002	Maize	nucleus	30.2	11.0
Zm00001d017660_P021	Maize	nucleus	28.55	10.91
Zm00001d006428_P002	Maize	nucleus	27.66	9.95
Zm00001d021541_P002	Maize	nucleus	27.54	9.75
Zm00001d037346_P007	Maize	nucleus	31.47	6.51

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A1D6FAK0	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	ProteinID:ONM28098.1	ProteinID:ONM28101.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0008424EC9	EnsemblPlantsGene:Zm00001d007978
EnsemblPlants:Zm00001d007978_P003	EnsemblPlants:Zm00001d007978_T003	SEG:seg	:	:	:

Description

chromatin complex subunit A 101Chromatin complex subunit A101

Coordinates

chr2:-:244407619..244413284

Molecular Weight (calculated)

89371.9 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.456

Length

788 amino acids

Sequence
(BLAST)

001: MGTLSMSDAS PIPAKNWDAS PVKLEAQGGD AILGMKEEER LLELVKDEQA DGILDSLPID LEAKNGDASL ITEAMKKEEE QLEDTRIKVQ EEEEARKREE
101: AARLAFDPET QYNKLDELLT KTQLFSEFLL ENMDRIADES VETQAEQPQV EEKKKGRGRK RKAKPQYNDK KAKTAVAAML TRSREERLAE DSTLSEEERW
201: EKEQANLVPL LTGGKLKSYQ IKGVKWLISL WQNGLNGILA DQMGLGKTIQ TIGFLAHLKG KGMHGPYLII APLSTLSNWV NEISRFTPSL VSIIYHGGKA
301: ARAEIRRKFM PTNVGPDFPI VVTSYEMAMF DAKFLAAYKW KYVVVDEGHR LKNAKCLLLK QLKRIPMDNK LLLTGTPLQN NLAELWSLLN FILPDIFSSH
401: QEFESWFDFS GGNEETDEKK RLHVVSKLHA ILRPFLLRRM KEDVEQMLPR KKEIIIYANM TEQQKQIQHH LIEKTFDNYL HEESDIILKR PGIRARLHNL
501: MIQLRKNCNH PDLLESPVDS TGLYPPVEKL LEQCGKFQLF DRLLNFLMAQ KHKVLVFSQW TKVLDIIEYY LDSKGHAVCR IDGNVKLEER RRQIAEFNDV
601: NSSMRIFLLS TRAGGLGINL TAADTCILYD SDWNPQMDLQ AMDRCHRIGQ TRPVHVYRLA TSHSVEGRMM KRAFGKLKLE HVVIGKGQFE QDRAKPSALD
701: VIPPTHPNLE GELLALLKDE QTEEDRIVQT DISDEDLQRL MDRSDLMGPP PGAGGANAAS PLVPLKGPGW EVVVPAKSGG GMLSSLTS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.